New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 937436	44 (0.850)	4 (0.080)	4/250	NT	8.8%	coding (8186/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 937482	41 (0.830)					coding (8140/18933 nt)	PP_0806	surface adhesion protein

CCCACCACGACACTGCCCAGTACAGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTG  >  NC_002947/937292‑937582                                                                                                                                                 |                                                                                                                                                   cccACCACGACACTGCCCAGTACAGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTgcggc                                                                                                                                                <  3:203005/149‑1 (MQ=255)    accacGACACTGCCCAGTACAGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGAc                                                                                                                                             >  6:51807/1‑149 (MQ=255)      cacGACACTGCCCAGTACAGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCt                                                                                                                                           >  3:310166/1‑149 (MQ=255)          acacTGCCCAGTACAGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCAc                                                                                                                                       <  8:241900/149‑1 (MQ=255)                        aGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAgg                                                                                                                         <  4:244970/149‑1 (MQ=255)                        aGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAgg                                                                                                                         >  2:304847/1‑149 (MQ=255)                                 aTCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGgcgatcgacaacaacggcacctcgtcgttgccggtg                                                                                                                >  7:172024‑M1/1‑113 (MQ=255)                                    ggcggcCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTTCACCGGCAACGACGAGGTGCCGttgttg                                                                                                              <  2:195377/148‑1 (MQ=255)                                     gcggcCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTgc                                                                                                                                                   >  4:33295/1‑110 (MQ=255)                                     gcggcCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTgc                                                                                                                                                   <  3:33295/110‑1 (MQ=255)                                        gcCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGAt                                                                                                         >  6:122211/1‑149 (MQ=255)                                          cAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCgttgtt                                                                                                               <  4:245191/141‑1 (MQ=255)                                          cAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCgttgtt                                                                                                               >  3:245191/1‑141 (MQ=255)                                          cAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCg                                                                                                       >  6:100341/1‑149 (MQ=255)                                           aGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGc                                                                                                      <  2:6444/149‑1 (MQ=255)                                               cacGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGgcgatcgacaacaacggcacctcgtcgttgccggtgcaggtcgccgcacc                                                                                                  <  8:172024‑M1/149‑51 (MQ=255)                                                   gacggTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGttgttg                                                                                                              <  2:104717/133‑1 (MQ=255)                                                   gacggTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGCCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGttgttg                                                                                                              >  1:104717/1‑133 (MQ=255)                                                           tgcctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAAc                                                                                      >  3:177670/1‑149 (MQ=255)                                                            gcctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGt                                                                                              >  2:22131/1‑140 (MQ=255)                                                            gcctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGt                                                                                              <  1:22131/140‑1 (MQ=255)                                                              ctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGttgttg                                                                                                              >  2:69892/1‑122 (MQ=255)                                                              ctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGttgttg                                                                                                              <  1:69892/122‑1 (MQ=255)                                                                     ggCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCTGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTg                                                                             <  3:27095/148‑1 (MQ=255)                                                                            ccGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGc                                                                     <  1:304847/149‑1 (MQ=255)                                                                              gCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCg                                                                   <  4:23017/149‑1 (MQ=255)                                                                               cTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCgg                                                                  <  4:177670/149‑1 (MQ=255)                                                                                tGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCgg                                                                  >  6:308367/1‑148 (MQ=255)                                                                                  acgacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGta                                                                >  2:246038/1‑148 (MQ=255)                                                                                  acgacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                 <  5:100341/147‑1 (MQ=255)                                                                                   cgacgGTACCATCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                 >  3:109676/1‑146 (MQ=255)                                                                                   cgacgGTACCATCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                 <  4:109676/146‑1 (MQ=255)                                                                                    gacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                <  6:23600/114‑1 (MQ=255)                                                                                    gacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                >  5:23600/1‑114 (MQ=255)                                                                                    gacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGtat                                                               >  3:213972/1‑147 (MQ=255)                                                                                             gTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACgg                                                    >  2:328112/1‑149 (MQ=255)                                                                                                  cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGgcgatcgacaacaacggcacctcgtcgttgccggtgcaggtcgccgcacca                                                                                                 >  3:41473‑M1/1‑48 (MQ=255)                                                                                                  cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGgcgatcgacaacaacggcacctcgtcgttgccggtgcaggtcgccgcacca                                                                                                 <  4:41473‑M1/99‑52 (MQ=255)                                                                                                  cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAg                                               <  4:213972/149‑1 (MQ=255)                                                                                                  cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAg                                               >  5:276729/1‑149 (MQ=255)                                                                                                  cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAg                                               <  3:301037/149‑1 (MQ=255)                                                                                                     tGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATAGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTg                                            >  2:276525/1‑149 (MQ=255)                                                                                                        ttGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGccc                                         >  3:141966/1‑149 (MQ=255)                                                                                                           cctgATCGCTTGTCTCCACAGGCGCGGTGATGTCTGGGGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCTCCAGCACGTCCAGCAACTCGACATTGGCCTTGGCCGGTATAAGCACCACGGTGAAGTTGCCCTct                                      <  8:18129/146‑2 (MQ=255)                                                                                                                tCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGcacc                                 <  6:276729/149‑1 (MQ=255)                                                                                                                    ttGGCTCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCt                                        <  1:207231/138‑1 (MQ=255)                                                                                                                    ttGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCCCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCt                                        >  2:207231/1‑138 (MQ=255)                                                                                                                            acaGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGc                      >  2:35721/1‑148 (MQ=255)                                                                                                                                    ggTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGAc               >  4:170058/1‑147 (MQ=255)                                                                                                                                         tGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTg        <  5:308367/149‑1 (MQ=255)                                                                                                                                           tCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGCGcc      >  7:14583/1‑149 (MQ=255)                                                                                                                                             tGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtg                                                      >  3:41473‑M2/1‑51 (MQ=255)                                                                                                                                             tGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtg                                                      <  4:41473‑M2/99‑49 (MQ=255)                                                                                                                                              ggTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtggcgacggtaccgtcgtcagcggccgcgccgaagcaggcagcaccgtccgtg   <  8:172024‑M2/149‑100 (MQ=255)                                                                                                                                               gTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTg  <  2:119287/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   CCCACCACGACACTGCCCAGTACAGTGGTGCCATCGGCGGCCAGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTG  >  NC_002947/937292‑937582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.