New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 937436	44 (0.850)	4 (0.080)	4/250	NT	8.8%	coding (8186/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 937482	41 (0.830)					coding (8140/18933 nt)	PP_0806	surface adhesion protein

AGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGCTGA  >  NC_002947/937334‑937628                                                                                                                                                     |                                                                                                                                                   aGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGc                                                                                                                                                    <  2:6444/149‑1 (MQ=255)                 tgcctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAAc                                                                                                                                    >  3:177670/1‑149 (MQ=255)                  gcctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGt                                                                                                                                            <  1:22131/140‑1 (MQ=255)                  gcctgcTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGt                                                                                                                                            >  2:22131/1‑140 (MQ=255)                           ggCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCTGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTg                                                                                                                           <  3:27095/148‑1 (MQ=255)                                  ccGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGc                                                                                                                   <  1:304847/149‑1 (MQ=255)                                    gCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCg                                                                                                                 <  4:23017/149‑1 (MQ=255)                                     cTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCgg                                                                                                                <  4:177670/149‑1 (MQ=255)                                      tGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCgg                                                                                                                >  6:308367/1‑148 (MQ=255)                                        acgacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGta                                                                                                              >  2:246038/1‑148 (MQ=255)                                        acgacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                                                               <  5:100341/147‑1 (MQ=255)                                         cgacgGTACCATCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                                                               <  4:109676/146‑1 (MQ=255)                                         cgacgGTACCATCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGt                                                                                                               >  3:109676/1‑146 (MQ=255)                                          gacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                                                              >  5:23600/1‑114 (MQ=255)                                          gacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccac                                                                                                                                              <  6:23600/114‑1 (MQ=255)                                          gacgGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGtat                                                                                                             >  3:213972/1‑147 (MQ=255)                                                   gTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACgg                                                                                                  >  2:328112/1‑149 (MQ=255)                                                        cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAg                                                                                             <  4:213972/149‑1 (MQ=255)                                                        cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAg                                                                                             <  3:301037/149‑1 (MQ=255)                                                        cACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAg                                                                                             >  5:276729/1‑149 (MQ=255)                                                           tGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATAGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTg                                                                                          >  2:276525/1‑149 (MQ=255)                                                              ttGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGccc                                                                                       >  3:141966/1‑149 (MQ=255)                                                                 cctgATCGCTTGTCTCCACAGGCGCGGTGATGTCTGGGGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCTCCAGCACGTCCAGCAACTCGACATTGGCCTTGGCCGGTATAAGCACCACGGTGAAGTTGCCCTct                                                                                    <  8:18129/146‑2 (MQ=255)                                                                      tCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGcacc                                                                               <  6:276729/149‑1 (MQ=255)                                                                          ttGGCTCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCt                                                                                      <  1:207231/138‑1 (MQ=255)                                                                          ttGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCCCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCt                                                                                      >  2:207231/1‑138 (MQ=255)                                                                                  acaGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGc                                                                    >  2:35721/1‑148 (MQ=255)                                                                                          ggTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGAc                                                             >  4:170058/1‑147 (MQ=255)                                                                                               tGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTg                                                      <  5:308367/149‑1 (MQ=255)                                                                                                 tCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGCGcc                                                    >  7:14583/1‑149 (MQ=255)                                                                                                   tGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtg                                                                                                    >  3:41473‑M2/1‑51 (MQ=255)                                                                                                   tGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtg                                                                                                    <  4:41473‑M2/99‑49 (MQ=255)                                                                                                    ggTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtggcgacggtaccgtcgtcagcggccgcgccgaagcaggcagcaccgtccgtg                                                 <  8:172024‑M2/149‑100 (MQ=255)                                                                                                     gTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTg                                                <  2:119287/149‑1 (MQ=255)                                                                                                           cgACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGAt                                                                      >  2:78847/1‑121 (MQ=255)                                                                                                           cgACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGAt                                                                      <  1:78847/121‑1 (MQ=255)                                                                                                             aCCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATg                                        <  3:170058/149‑1 (MQ=255)                                                                                                               cTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCa                                      >  1:112364/1‑149 (MQ=255)                                                                                                                  cACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCcaccagacatcaccgcgcctgtggcgccaagcgatctggcaatcagtggcgacggtaccgtcgtcagcggccgcgccgaagcaggcagcaccgtccgtgtgctggccgccgat                                   >  7:172024‑M2/1‑36 (MQ=255)                                                                                                                        cAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCAcgc                             <  4:310166/149‑1 (MQ=255)                                                                                                                            gtcgaGGTGCCGGTGTTGTCGATCTCCACGACGTCACGCACCTCTGCCTTGGCTTGGTCCGGTATACGTACCACGGTGAAGGTGCCATCGGCACCCACGACGAGGGTAACGATGAGCGTGCCGTTGGCATCATGCACTTCCACTCGGCt                         <  8:55028/147‑1 (MQ=255)                                                                                                                                aGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTAc                       >  2:321205/1‑147 (MQ=255)                                                                                                                                 ggTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcag                    >  6:14599/1‑149 (MQ=255)                                                                                                                                  gTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcag                    >  3:308648/1‑148 (MQ=255)                                                                                                                                    gCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcagcag                 >  8:106296/1‑149 (MQ=255)                                                                                                                                     ccGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACcagcag                 <  2:112364/148‑1 (MQ=255)                                                                                                                                          ttggtCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATg                                        <  2:281218/117‑1 (MQ=255)                                                                                                                                          gttgtCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAgta            <  1:246038/148‑3 (MQ=255)                                                                                                                                             gtCGATCGCCACCACGTCCAGCAACTCGTCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAAc        >  6:168255/1‑149 (MQ=255)                                                                                                                                              tCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTg                                                      >  4:206771/1‑102 (MQ=255)                                                                                                                                                 aTCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGACGGTGCCCTCGCCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGCt    >  1:198483/1‑149 (MQ=255)                                                                                                                                                 aTCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGCt    >  7:187495/1‑149 (MQ=255)                                                                                                                                                     ccaccaCGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGCTGa  >  7:286607/1‑147 (MQ=255)                                                                                                                                                     ccaccaCGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGCTGa  <  8:286607/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   AGCACACGGACGGTGCTGCCTGCTTCGGCGCGGCCGCTGACGACGGTACCGTCGCCACTGATTGCCAGATCGCTTGGCGCCACAGGCGCGGTGATGTCTGGTGCGGCGACCTGCACCGGCAACGACGAGGTGCCGTTGTTGTCGATCGCCACCACGTCCAGCAACTCGCCATTGGCCTGGGCCGGTATAAGCACCACGGTGAAGGTGCCCTCGGCACCCACCACGATGCTACCGACCAGCGTGCCGTTGGCATCATGCACTTCCACGCGGCTACCAGCAGGAGCAGAACCGCTGA  >  NC_002947/937334‑937628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.