New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2101481 =	36 (0.700)	3 (0.060)	3/236	NT	8.6%	intergenic (+17/+59)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
	?	NC_002947	2101525 =	31 (0.660)					intergenic (+61/+15)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein

CGTTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCC  >  NC_002947/2101334‑2101624                                                                                                                                                     |                                                                                                                                                gaaactgttggcccgggccaatgcccaggtactggaccgcatggccccggcagaagacgagcacaacgaattgaccgatgggctcatgaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcc                                                                                                                                                 <  6:58121‑M1/1‑1 (MQ=255) cGTTGGTTAAGGACGGCATGTTGATGGTCGTGCTGGACCTGGACAGCCCGACGTTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCg                                                                                                                                                <  6:168302/149‑1 (MQ=255) cGTTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCCGATCAATGTTGCCTGAG‑TCg                                                                                                                                                >  3:2841/1‑149 (MQ=255)   ttGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGc                                                                                                                                              <  4:182357/149‑1 (MQ=255)     ggTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCct                                                                                                                                            >  2:62857/1‑149 (MQ=255)      gTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCctc                                                                                                                                           >  4:321233/1‑149 (MQ=255)               ggCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTg                                                                                                                                   >  2:185087/1‑148 (MQ=255)                gCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTa                                                                                                                                 <  1:314305/149‑1 (MQ=255)                        aTTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCgg                                                                                                                          <  3:321233/148‑1 (MQ=255)                        aTTGGCGTGCTGGACCTGGACAGCCAGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTAGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCggg                                                                                                                         >  4:155924/1‑149 (MQ=255)                               tGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTAccc                                                                                                                  <  5:32278/149‑1 (MQ=255)                                 ctggagctggacAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCcg                                                                                                                 <  3:297755/148‑1 (MQ=255)                                    gacctggacAGCCCGACGGTCGGGCGGTTCAGCGAGGGGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCCGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGaa                                                                                                             <  4:2841/149‑1 (MQ=255)                                           acAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg                                                                                                      <  5:142670/149‑1 (MQ=255)                                            gccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg                                                                                                      >  5:175872‑M1/106‑149 (MQ=255)                                             ccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                                     <  1:200786‑M1/45‑1 (MQ=255)                                             ccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                                     >  2:200786‑M1/105‑149 (MQ=255)                                                       tCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAAc                                                                                          <  6:273192/149‑1 (MQ=255)                                                          ggCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCggt                                                                                                                                              <  3:224748/94‑2 (MQ=255)                                                          ggCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCggt                                                                                                                                              >  4:224748/1‑93 (MQ=255)                                                                   gCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCg                                                                                >  3:40350/1‑147 (MQ=255)                                                                         cGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCAc                                                                        <  1:185087/149‑1 (MQ=255)                                                                          ggACCAGGTGGGGCTGGAGCGGTTGGAGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCAcc                                                                       >  5:51277/1‑149 (MQ=255)                                                                           gACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCtt                                                                                                                                    <  8:276023/87‑1 (MQ=255)                                                                           gACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCtt                                                                                                                                    >  7:276023/1‑87 (MQ=255)                                                                            cgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTc                                                                                                                                        <  7:202294‑M1/10‑1 (MQ=255)                                                                            cgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTc                                                                                                                                        >  8:202294‑M1/74‑83 (MQ=255)                                                                                ggTGGGACTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGc                                                                                                    <  6:15597/114‑1 (MQ=255)                                                                                ggTGGGACTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGc                                                                                                    >  5:15597/1‑114 (MQ=255)                                                                                        tGGAGCGGTTGGCGGCGATGTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGAACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGt                                                         >  3:196831/1‑149 (MQ=255)                                                                                          gAGGGGTTGGCGGCGATCTTTCTGGCGGTGACTGACTGCTTATCAATGTTGCCTGAG‑TCGGCCTGTTCGCTTGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGt                                                         <  3:155924/147‑1 (MQ=39)                                                                                                      gcgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCgg                                           <  6:51277/149‑1 (MQ=255)                                                                                                      gcgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCgg                                           >  8:31855/1‑149 (MQ=255)                                                                                                       cgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGt                                          <  1:62857/149‑1 (MQ=255)                                                                                                           tggaagaagaaggtgatctacgactgattggttaacctgtgcCg                                                                                                                                                <  1:287477‑M1/2‑1 (MQ=255)                                                                                                           tggaagaagaaggtgatctacgactgattggttaacctgtgcCg                                                                                                                                                >  2:287477‑M1/43‑44 (MQ=255)                                                                                                            tttCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTttcttc                                                   <  4:199690/135‑1 (MQ=255)                                                                                                            tttCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTttcttc                                                   >  3:199690/1‑135 (MQ=255)                                                                                                              tCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCt                                        <  5:27356/144‑1 (MQ=255)                                                                                                                  gCGTTGACTGACTGCTGATCAATGTTGCCTGAGTTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCa                                >  1:210875/1‑149 (MQ=255)                                                                                                                  gCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCAt                               <  4:40350/149‑1 (MQ=255)                                                                                                                     ttGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCgg                            >  1:326750/1‑149 (MQ=255)                                                                                                                            actgCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTc                     >  3:75431/1‑149 (MQ=255)                                                                                                                                ctgATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGtt                  <  2:210875/148‑1 (MQ=255)                                                                                                                                ctgATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTtg                 >  1:291135/1‑149 (MQ=255)                                                                                                                                    tCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGc              <  5:191548/148‑1 (MQ=255)                                                                                                                                      aaTGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCg                    >  6:122824/1‑140 (MQ=255)                                                                                                                                      aaTGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCg                    <  5:122824/140‑1 (MQ=255)                                                                                                                                          ttGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGtct        <  2:326750/148‑1 (MQ=255)                                                                                                                                               tGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCATGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGcc  >  5:58121/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                CGTTGGTGAAGGACGGCAGGTTGATTGGCGTGCTGGACCTGGACAGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCC  >  NC_002947/2101334‑2101624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.