New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2101481 =	36 (0.700)	3 (0.060)	3/236	NT	8.6%	intergenic (+17/+59)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein
	?	NC_002947	2101525 =	31 (0.660)					intergenic (+61/+15)	msrC/PP_1878	free methionine‑(R)‑sulfoxide reductase/hypothetical protein

AGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCCAACAGTTTC  >  NC_002947/2101378‑2101672                                                                                                                                                     |                                                                                                                                                    ccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                                                                                     <  1:200786‑M1/45‑1 (MQ=255) ccccggcagaagacgagcacaacgaattgaccgatgggctcaagaccgatgaggaagaaacctggaagaagaaggtgatctacgactgattggttaacctgtgcCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                                                                                     >  2:200786‑M1/105‑149 (MQ=255)           tCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAAc                                                                                                                                          <  6:273192/149‑1 (MQ=255)                       gCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCg                                                                                                                                >  3:40350/1‑147 (MQ=255)                             cGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCAc                                                                                                                        <  1:185087/149‑1 (MQ=255)                              ggACCAGGTGGGGCTGGAGCGGTTGGAGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCAcc                                                                                                                       >  5:51277/1‑149 (MQ=255)                                    ggTGGGACTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGc                                                                                                                                                    <  6:15597/114‑1 (MQ=255)                                    ggTGGGACTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGc                                                                                                                                                    >  5:15597/1‑114 (MQ=255)                                            tGGAGCGGTTGGCGGCGATGTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGAACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGt                                                                                                         >  3:196831/1‑149 (MQ=255)                                              gAGGGGTTGGCGGCGATCTTTCTGGCGGTGACTGACTGCTTATCAATGTTGCCTGAG‑TCGGCCTGTTCGCTTGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGt                                                                                                         <  3:155924/147‑1 (MQ=39)                                                          gcgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCgg                                                                                           <  6:51277/149‑1 (MQ=255)                                                          gcgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCgg                                                                                           >  8:31855/1‑149 (MQ=255)                                                           cgATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGt                                                                                          <  1:62857/149‑1 (MQ=255)                                                                tttCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTttcttc                                                                                                   <  4:199690/135‑1 (MQ=255)                                                                tttCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTttcttc                                                                                                   >  3:199690/1‑135 (MQ=255)                                                                  tCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCt                                                                                        <  5:27356/144‑1 (MQ=255)                                                                      gCGTTGACTGACTGCTGATCAATGTTGCCTGAGTTCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCa                                                                                >  1:210875/1‑149 (MQ=255)                                                                      gCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCAt                                                                               <  4:40350/149‑1 (MQ=255)                                                                         ttGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCgg                                                                            >  1:326750/1‑149 (MQ=255)                                                                                actgCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTc                                                                     >  3:75431/1‑149 (MQ=255)                                                                                    ctgATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGtt                                                                  <  2:210875/148‑1 (MQ=255)                                                                                    ctgATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTtg                                                                 >  1:291135/1‑149 (MQ=255)                                                                                        tCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGc                                                              <  5:191548/148‑1 (MQ=255)                                                                                          aaTGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCg                                                                    >  6:122824/1‑140 (MQ=255)                                                                                          aaTGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCg                                                                    <  5:122824/140‑1 (MQ=255)                                                                                              ttGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGtct                                                        <  2:326750/148‑1 (MQ=255)                                                                                                   tGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCATGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGcc                                                  >  5:58121/1‑149 (MQ=255)                                                                                                        ccggcctcttcgcgggtaaacccgctcctacaagcgaagaggccgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCgggg                                              <  1:200786‑M2/104‑1 (MQ=255)                                                                                                        ccggcctcttcgcgggtaaacccgctcctacaagcgaagaggccgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCgggg                                              >  2:200786‑M2/46‑149 (MQ=255)                                                                                                         cggcctcttcgcgggtaaacccgctcctacaagcgaagaggccgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGc                                             >  5:175872‑M2/45‑149 (MQ=255)                                                                                                           GCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCggg                                               >  6:127683‑M1/1‑145 (MQ=255)                                                                                                           GCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCggg                                               <  5:127683‑M1/145‑1 (MQ=255)                                                                                                                TTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCgg                                      <  5:279021‑M1/149‑1 (MQ=255)                                                                                                                       gTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGc                                                              >  3:69795/1‑118 (MQ=255)                                                                                                                       gTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGc                                                              <  4:69795/118‑1 (MQ=255)                                                                                                                        tAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTAc                              <  4:75431/149‑1 (MQ=255)                                                                                                                        tAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTAc                              >  3:186951/1‑149 (MQ=255)                                                                                                                            aGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTgg                          <  7:31855/149‑1 (MQ=255)                                                                                                                            aGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTgg                          <  6:279021/149‑1 (MQ=255)                                                                                                                            aGCGGGATTACCCGCGAAGAGGCCGTCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTgg                          <  4:196831/149‑1 (MQ=255)                                                                                                                             gCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTggg                         >  2:39663/1‑149 (MQ=255)                                                                                                                                      cccGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGccc                <  1:128069/149‑1 (MQ=255)                                                                                                                                       ccGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGccc                >  2:128069/1‑148 (MQ=255)                                                                                                                                           gaagaggccgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCg                                                                             <  7:202294‑M2/73‑1 (MQ=255)                                                                                                                                           gaagaggccgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCg                                                                             >  8:202294‑M2/11‑83 (MQ=255)                                                                                                                                                   cgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCa                                                                                                            <  1:287477‑M2/42‑1 (MQ=255)                                                                                                                                                   cgGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCa                                                                                                            >  2:287477‑M2/3‑44 (MQ=255)                                                                                                                                                    gGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCATGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCCAACAGTTTc  <  6:58121‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCCCGACGGTCGGGCGGTTCAGCGAGGCGGACCAGGTGGGGCTGGAGCGGTTGGCGGCGATCTTTCTGGCGTTGACTGACTGCTGATCAATGTTGCCTGAG‑TCGGCCTCTTCGCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGTTAACCAATCAGTCGTAGATCACCTTCTTCTTCCAGGTTTCTTCCTCATCGGTCTTGAGCCCATCGGTCAATTCGTTGTGCTCGTCTTCTGCCGGGGCCATGCGGTCCAGTACCTGGGCATTGGCCCGGGCCAACAGTTTC  >  NC_002947/2101378‑2101672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.