New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2556868	37 (0.720)	5 (0.100)	4/248	NT	11.1%	coding (443/1200 nt)	PP_2241	MFS transporter
	?	NC_002947	= 2556900	45 (0.910)					coding (411/1200 nt)	PP_2241	MFS transporter

GCAATCAGGATATACACCGCCACGAACGCCGGGATAACAGCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCAT  >  NC_002947/2556721‑2557013                                                                                                                                                    |                                                                                                                                                   gCAATCAGGATATACACCGCCACGAACGCCGGGATAACAGCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGaa                                                                                                                                                   <  5:87486/149‑1 (MQ=255)   aaTCAGGATATACACCGCCACGAACGCCGGGATAACAGCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAAcg                                                                                                                                                 >  4:254379/1‑149 (MQ=255)               cacCGCCACGAAAGCCGTGATAACAGCTACCCAGAACACGGTCTGGAAATGGCTCGCTTTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCcgcgccgcgc                                                                                                                                      <  6:263391/148‑1 (MQ=255)                              cGGGATAACAGCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGCGCGCCTGACGCAGCCCGAACGCCGCGCCGCGCAGCACGACCGGCGTaa                                                                                                                      >  7:196976/1‑149 (MQ=255)                                ggATACCAGCTACCCAGACCACGGTCGGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAtgttacgccggtcgagctgcgcggcgcggcgt                                                                                                                    <  4:68344‑M1/149‑33 (MQ=255)                                        gCTACCCAGAACTCGTTCTGGAAATGGCTCGCTGTCAACCACATCAATTCGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGTTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGccac                                                                                                            <  8:123123/149‑1 (MQ=255)                                             ccAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACAATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAgcg                                                                                                       >  2:299594/1‑149 (MQ=255)                                                   cacGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATcgc                                                                                                 <  7:108997/149‑1 (MQ=255)                                                      ggTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAtgttacgccggtcgagctgcgcggcgcggcgttcggcct                                                                                                             <  1:175162‑M1/134‑40 (MQ=255)                                                      ggTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAtgttacgccggtcgagctgcgcggcgcggcgttcggcct                                                                                                             >  2:175162‑M1/1‑95 (MQ=255)                                                        tCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTggg                                                                                            >  7:28929/1‑149 (MQ=255)                                                           ggAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑ccc                                                                                        >  5:86017/1‑149 (MQ=255)                                                            gAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑cc                                                                                         <  1:249433/147‑1 (MQ=255)                                                               aTGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCg                                                                                                                            <  8:123302/110‑1 (MQ=255)                                                               aTGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCg                                                                                                                            >  7:123302/1‑110 (MQ=255)                                                                    tCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATa                                                                               >  2:14766/1‑149 (MQ=255)                                                                    tCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATa                                                                               >  8:20388/1‑149 (MQ=255)                                                                        tGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCt                                                                           >  3:279428/1‑149 (MQ=255)                                                                          tCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGAc                                                                                                                              >  1:42327/1‑97 (MQ=255)                                                                          tCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGAc                                                                                                                              <  2:42327/97‑1 (MQ=255)                                                                            aaCCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGGtgttacgccggtcgagctgcgcggcgcggcgttcggcct                                                                                                             <  5:183634‑M1/112‑40 (MQ=255)                                                                            aaCCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGGtgttacgccggtcgagctgcgcggcgcggcgttcggcct                                                                                                             >  6:183634‑M1/1‑73 (MQ=255)                                                                            aaCCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGcc                                                                       >  1:254714/1‑149 (MQ=255)                                                                              ccACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTg                                                                                              >  2:212191/1‑125 (MQ=255)                                                                              ccACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTg                                                                                              <  1:212191/125‑1 (MQ=255)                                                                              ccACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCCGTATACCCTTGcc                                                                       >  6:227072/1‑148 (MQ=255)                                                                                          gATCGCCAGCAATGGCCCGAGGATAGCTACTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCTCCGCGCAGCTCGACCGGGGTAACATCGGCCACCAGCGCATCGCGTTGG‑CCCCCCCGAATACCCTTGCCGACGCGGTcgacga                                                         <  8:196976/149‑1 (MQ=255)                                                                                          gATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑cccccc                                                                                     >  7:183375/1‑121 (MQ=255)                                                                                          gATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑cccccc                                                                                     <  8:183375/121‑1 (MQ=255)                                                                                           aTCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGaa                                                        <  8:28929/149‑1 (MQ=255)                                                                                               ccAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGt                                                    >  8:1486/1‑149 (MQ=255)                                                                                                             aGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTc                                                              >  7:63273/1‑125 (MQ=255)                                                                                                             aGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTc                                                              <  8:63273/125‑1 (MQ=255)                                                                                                                   gcgcCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCaa                                 <  1:299594/148‑1 (MQ=255)                                                                                                                          cGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCgg                           <  7:20388/147‑1 (MQ=255)                                                                                                                             tATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGc                       >  3:89570/1‑148 (MQ=255)                                                                                                                               tCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCCGTATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGcc                      <  5:227072/148‑1 (MQ=255)                                                                                                                                 gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                  >  2:237485/1‑149 (MQ=255)                                                                                                                                 gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                  >  7:200394/1‑149 (MQ=255)                                                                                                                                 gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                  >  3:293445/1‑149 (MQ=255)                                                                                                                                 gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATg                   <  1:14766/148‑1 (MQ=255)                                                                                                                                  aGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                  >  2:313482/1‑149 (MQ=255)                                                                                                                                        tGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATAc           >  6:207296/1‑149 (MQ=255)                                                                                                                                            gCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGc       >  6:132115/1‑149 (MQ=255)                                                                                                                                              aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAtcggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggttgacagcgagccatttccagacc                     >  2:175162‑M2/1‑39 (MQ=255)                                                                                                                                              aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAtcggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggttgacagcgagccatttccagacc                     <  1:175162‑M2/134‑96 (MQ=255)                                                                                                                                              aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAccggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggtt                                           >  6:183634‑M2/1‑39 (MQ=255)                                                                                                                                              aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAccggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggtt                                           <  5:183634‑M2/112‑74 (MQ=255)                                                                                                                                                   gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGa                         >  7:55919/1‑124 (MQ=255)                                                                                                                                                   gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGa                         <  8:55919/124‑1 (MQ=255)                                                                                                                                                   gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTtcat  >  6:157123/1‑147 (MQ=255)                                                                                                                                                   gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTtcat  >  5:324808/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GCAATCAGGATATACACCGCCACGAACGCCGGGATAACAGCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCAT  >  NC_002947/2556721‑2557013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.