New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2556868	37 (0.720)	5 (0.100)	4/248	NT	11.1%	coding (443/1200 nt)	PP_2241	MFS transporter
	?	NC_002947	= 2556900	45 (0.910)					coding (411/1200 nt)	PP_2241	MFS transporter

GCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTCAGCA  >  NC_002947/2556760‑2557048                                                                                                                                             |                                                                                                                                                      gCTACCCAGAACTCGTTCTGGAAATGGCTCGCTGTCAACCACATCAATTCGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGTTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGccac                                                                                                                                               <  8:123123/149‑1 (MQ=255)      ccAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACAATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAgcg                                                                                                                                          >  2:299594/1‑149 (MQ=255)            cacGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATcgc                                                                                                                                    <  7:108997/149‑1 (MQ=255)                 tCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTggg                                                                                                                               >  7:28929/1‑149 (MQ=255)                    ggAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑ccc                                                                                                                           >  5:86017/1‑149 (MQ=255)                     gAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑cc                                                                                                                            <  1:249433/147‑1 (MQ=255)                             tCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATa                                                                                                                  >  2:14766/1‑149 (MQ=255)                             tCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATa                                                                                                                  >  8:20388/1‑149 (MQ=255)                                 tGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCt                                                                                                              >  3:279428/1‑149 (MQ=255)                                     aaCCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGcc                                                                                                          >  1:254714/1‑149 (MQ=255)                                       ccACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTg                                                                                                                                 <  1:212191/125‑1 (MQ=255)                                       ccACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTg                                                                                                                                 >  2:212191/1‑125 (MQ=255)                                       ccACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCCGTATACCCTTGcc                                                                                                          >  6:227072/1‑148 (MQ=255)                                                   gATCGCCAGCAATGGCCCGAGGATAGCTACTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCTCCGCGCAGCTCGACCGGGGTAACATCGGCCACCAGCGCATCGCGTTGG‑CCCCCCCGAATACCCTTGCCGACGCGGTcgacga                                                                                            <  8:196976/149‑1 (MQ=255)                                                   gATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑cccccc                                                                                                                        >  7:183375/1‑121 (MQ=255)                                                   gATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑cccccc                                                                                                                        <  8:183375/121‑1 (MQ=255)                                                    aTCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGaa                                                                                           <  8:28929/149‑1 (MQ=255)                                                        ccAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGt                                                                                       >  8:1486/1‑149 (MQ=255)                                                                      aGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTc                                                                                                 <  8:63273/125‑1 (MQ=255)                                                                      aGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTc                                                                                                 >  7:63273/1‑125 (MQ=255)                                                                            gcgcCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCaa                                                                    <  1:299594/148‑1 (MQ=255)                                                                                   cGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCgg                                                              <  7:20388/147‑1 (MQ=255)                                                                                      tATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGc                                                          >  3:89570/1‑148 (MQ=255)                                                                                        tCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCCGTATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGcc                                                         <  5:227072/148‑1 (MQ=255)                                                                                          gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                                                     >  3:293445/1‑149 (MQ=255)                                                                                          gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                                                     >  2:237485/1‑149 (MQ=255)                                                                                          gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                                                     >  7:200394/1‑149 (MQ=255)                                                                                          gAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATg                                                      <  1:14766/148‑1 (MQ=255)                                                                                           aGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGGCCCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATgg                                                     >  2:313482/1‑149 (MQ=255)                                                                                                 tGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATAc                                              >  6:207296/1‑149 (MQ=255)                                                                                                     gCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGc                                          >  6:132115/1‑149 (MQ=255)                                                                                                       aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAtcggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggttgacagcgagccatttccagacc                                                        <  1:175162‑M2/134‑96 (MQ=255)                                                                                                       aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAtcggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggttgacagcgagccatttccagacc                                                        >  2:175162‑M2/1‑39 (MQ=255)                                                                                                       aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAccggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggtt                                                                              >  6:183634‑M2/1‑39 (MQ=255)                                                                                                       aGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACAccggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggtt                                                                              <  5:183634‑M2/112‑74 (MQ=255)                                                                                                            gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGa                                                            <  8:55919/124‑1 (MQ=255)                                                                                                            gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGa                                                            >  7:55919/1‑124 (MQ=255)                                                                                                            gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTtcat                                     >  6:157123/1‑147 (MQ=255)                                                                                                            gAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTtcat                                     >  5:324808/1‑147 (MQ=255)                                                                                                              aCGCCGCGCCGCGCAGCTCGACCGGCGTAACAtcggcctgcgtcaggcgctcgataccgtaggcgctatcctcgggccattgctggcgatcgtattgatgtggttgacagcgagccatttcccgaccgtggtctgggtagctggtatcc                                  <  4:68344‑M2/149‑118 (MQ=255)                                                                                                              aCGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAgc                                 <  4:293445/149‑1 (MQ=255)                                                                                                              aCGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAgc                                 >  5:59852/1‑149 (MQ=255)                                                                                                                       cgcgcAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAgg                        <  3:254379/149‑1 (MQ=255)                                                                                                                                 gACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGcc                >  6:49718/1‑147 (MQ=255)                                                                                                                                 gACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGa              <  7:1486/149‑1 (MQ=255)                                                                                                                                   ccGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGCCGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAg             >  8:221298/1‑148 (MQ=255)                                                                                                                                   ccGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAgg            <  1:237485/149‑1 (MQ=255)                                                                                                                                     ggCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGAc          <  2:254714/149‑1 (MQ=255)                                                                                                                                      gCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGcc                                                                                                          <  5:162048/52‑1 (MQ=255)                                                                                                                                      gCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGcc                                                                                                          >  6:162048/1‑52 (MQ=255)                                                                                                                                        gTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACTCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGTAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGt       <  6:86017/149‑1 (MQ=255)                                                                                                                                         tAACATCGGCGACCAGGGAATCGCGTGGG‑CGCCCCCTTATACCGTTGCCGACGCGGTCGACGAAGCGTGCCGCAGGCAGCGACTCAAGTCCGGGAGCCATGGGAAATACGGGGTTCATCAGCGGTCTGAGGCCGTAGCGGATGagtttc      <  4:279428/149‑6 (MQ=255)                                                                                                                                          aaCATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGt       >  1:195317/1‑147 (MQ=255)                                                                                                                                          aaCATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGt       >  4:15044/1‑147 (MQ=255)                                                                                                                                            cATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTcag    >  2:202786/1‑148 (MQ=255)                                                                                                                                             aTCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTcagca  <  6:59852/149‑1 (MQ=255)                                                                                                                                             aTCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTcag    >  6:331057/1‑147 (MQ=255)                                                                                                                                             |                                                                                                                                                      GCTACCCAGAACACGGTCTGGAAATGGCTCGCTGTCAACCACATCAATACGATCGCCAGCAATGGCCCGAGGATAGCGCCTACGGTATCGAGCGCCTGACGCAGGCCGAACGCCGCGCCGCGCAGCTCGACCGGCGTAACATCGGCCACCAGCGCATCGCGTGGG‑CCCCCCCGAATACCCTTGCCGACGCGGTCGACGAAGCGTGCCGCAGTCAGCCACTCAAGTCCGGGAGCCATGGGAAATACCGGCTTCATCAGCGCACTGAGGCCGTAGCCGAGGACTGTCAGCA  >  NC_002947/2556760‑2557048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.