New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2936886	46 (0.890)	5 (0.100)	5/244	NT	9.6%	coding (920/1677 nt)	PP_2569	MHS family metabolite MFS transporter
	?	NC_002947	= 2936914	51 (1.050)					coding (948/1677 nt)	PP_2569	MHS family metabolite MFS transporter

GGCGGCACCGCCGGCCAGGCCGTGGTGTGGTACACCGGGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTT  >  NC_002947/2936738‑2937031                                                                                                                                                       |                                                                                                                                                   ggcggcACCGCCGGCCAGGCCGTGGTGTGGTACACCGGGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTT                                                                                                                                                    <  7:187645‑M1/149‑1 (MQ=255)                 aGGCCGTGGTGTGGTACACCGGGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTgcggccaatccggtcg                                                                                                                                    >  2:307725‑M1/1‑133 (MQ=255)                    ccGTGGTGTGGTACACCGGGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCg                                                                                                                                  >  7:192589/1‑148 (MQ=255)                         gtgtggtACACAGGGCAGTTCTACTCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTCACATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGAtt                                                                                                                              <  1:263446/149‑1 (MQ=255)                          tgtggtACACCGGGCAGTTCTACGCGTTGTTCATCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGc                                                                                                                           <  1:228537/149‑1 (MQ=255)                                      ggCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTgcggccaatccggtcggacaggctgccgaagaaaatg                                                                                                               <  1:307725‑M1/149‑38 (MQ=255)                                      ggCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAatc                                                                                                              <  8:192589/149‑1 (MQ=255)                                       gCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTgcggccaatccggtcggacaggctgccgaagaaaatga                                                                                                              <  6:313228‑M1/149‑39 (MQ=255)                                                 gcgTTGTTCTTCCTGTTGCAGCAGCTCAAGATCGAGGCGCAGACCGCAAACCTGCT‑‑GATTGCCGGTTAACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGGACGACCGGATTGGCCGCAA‑GAAAATCATCCTGGCCgg                                                                                                   >  6:194485/1‑149 (MQ=255)                                                   gtggttCTTCCTGGTTCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCTGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCt                                                                                                 <  6:18406/146‑1 (MQ=255)                                                       ttcttcCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGcat                                                                                             >  7:130268/1‑149 (MQ=255)                                                            ccTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCatcatc                                                                                         <  8:242891/148‑1 (MQ=255)                                                             cTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATcg                                                                                        <  2:199115/148‑1 (MQ=255)                                                              tGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATcgcc                                                                                      >  4:115383/1‑149 (MQ=255)                                                                  gCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCgcgc                                                                                  >  2:255860/1‑149 (MQ=255)                                                                     gACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGa                                                                               <  8:130268/149‑1 (MQ=255)                                                                          tCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTAc                                                                          >  8:26125/1‑149 (MQ=255)                                                                          tCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCAGGTTCACTGTTGATCGGCACACCATTCTTCATTTACTTCGGCAGCCAGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTAc                                                                          >  1:168029/1‑149 (MQ=255)                                                                                 cGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGa                                                                   >  6:61515/1‑149 (MQ=255)                                                                                     gcgcAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTgcggccaatccggtcggacaggctgccgaagaaaatgaagaat                                                                                                         >  7:177910‑M1/1‑65 (MQ=255)                                                                                     gcgcAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTgcggccaatccggtcggacaggctgccgaagaaaatgaagaat                                                                                                         <  8:177910‑M1/108‑44 (MQ=255)                                                                                      cgcAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCtt                                                               >  8:37876/1‑148 (MQ=255)                                                                                       gcAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTc                                                              >  2:29400/1‑148 (MQ=255)                                                                                        cAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAATCAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCa                                                             <  1:255860/149‑1 (MQ=255)                                                                                        cAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCaa                                                            <  3:35388/149‑1 (MQ=255)                                                                                        cAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCaa                                                            <  3:115383/149‑1 (MQ=255)                                                                                         aGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAg                                                           >  6:257062/1‑149 (MQ=255)                                                                                                  aCCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGAcc                                                  <  5:257062/149‑1 (MQ=255)                                                                                                     tgct‑‑gATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAg                                               >  6:287764/1‑149 (MQ=255)                                                                                                     tgct‑‑gATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATATTCAAGGCACTGACCGAg                                               >  8:198227/1‑149 (MQ=255)                                                                                                       ct‑‑gATTGCCGGTTGACTGTTGATCTGCACACGATTCTTGATTTTCTTCGGCAGCCTGTCCTACCGGATTGGCCGCAA‑GATAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTAGTTCCCGATCTTCAAGGCACTGTCCGAGt                                              <  2:322063/148‑1 (MQ=255)                                                                                                            aTTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACg                                           <  7:53789/148‑1 (MQ=255)                                                                                                                 cGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAAcc                                     >  4:126350/1‑149 (MQ=255)                                                                                                                       aCTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAatcatc                                                                                                           <  8:44922/73‑1 (MQ=255)                                                                                                                       aCTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAatcatc                                                                                                           >  7:44922/1‑73 (MQ=255)                                                                                                                         tGTTGATTGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTa                             >  5:91976/1‑149 (MQ=255)                                                                                                                           ttGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTAtt                           >  7:196980/1‑149 (MQ=255)                                                                                                                              aTCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGt                        >  4:153205/1‑149 (MQ=255)                                                                                                                               tCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGtt                       <  4:296762/149‑1 (MQ=255)                                                                                                                               tCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGtt                       <  1:29400/149‑1 (MQ=255)                                                                                                                               tCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGGCCGACCGGATTGGCCGCAA‑GAAAATAATCATGGCCGGCGGCATCATCGCCGCGCTGACATACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATGCGtt                       <  5:194485/149‑1 (MQ=255)                                                                                                                               tCGGCACACCATTCTTCATTTTCATCGGCAGCCTGTCCGACCGGATTGCCCGCAA‑GAATATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGtt                       <  5:199000/149‑1 (MQ=255)                                                                                                                                   cacaCCATTCTTCATTTTCTTCGGGAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGTCCGAGTACGGCAACCCGGATGTATTCGTTGccc                   <  2:168029/149‑1 (MQ=255)                                                                                                                                       ccATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGa               <  5:30188/149‑1 (MQ=255)                                                                                                                                         aTTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgc                                                       >  7:177910‑M2/1‑43 (MQ=255)                                                                                                                                         aTTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgc                                                       <  8:177910‑M2/108‑66 (MQ=255)                                                                                                                                         aTTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGc             <  5:287764/149‑1 (MQ=255)                                                                                                                                            cttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAg           >  3:143717/1‑148 (MQ=255)                                                                                                                                             ttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGaa         >  5:166933/1‑149 (MQ=255)                                                                                                                                              tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaagaacaacgcgtagaactgc         <  6:313228‑M2/149‑112 (MQ=255)                                                                                                                                              tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGt                        <  2:199814/133‑1 (MQ=255)                                                                                                                                              tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGt                        >  1:199814/1‑133 (MQ=255)                                                                                                                                              tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAAc        >  4:283260/1‑149 (MQ=255)                                                                                                                                               cATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaagaacaacgcgtagaactgcc        <  1:307725‑M2/149‑113 (MQ=255)                                                                                                                                               cATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGa          <  5:61515/146‑1 (MQ=255)                                                                                                                                                aTTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAAcc       <  7:198227/148‑1 (MQ=255)                                                                                                                                                    tcttcGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGtt  >  7:209020/1‑149 (MQ=255)                                                                                                                                                     cttcGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGAt                                <  6:134583/118‑1 (MQ=255)                                                                                                                                                     cttcGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGAt                                >  5:134583/1‑118 (MQ=255)                                                                                                                                                       |                                                                                                                                                   GGCGGCACCGCCGGCCAGGCCGTGGTGTGGTACACCGGGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCT‑‑GATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAA‑GAAAATCATCATGGCCGGCTGCATCATCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTT  >  NC_002947/2936738‑2937031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.