New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3092890	39 (0.760)	5 (0.100)	5/256	NT	11.7%	coding (851/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	= 3092929	37 (0.730)					coding (890/939 nt)	PP_2701	LysR family transcriptional regulator

AATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCG  >  NC_002947/3092746‑3093037                                                                                                                                                 |                                                                                                                                                    aaTCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGgcgc                                                                                                                                                   >  8:96899/1‑147 (MQ=255) aaTCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGgcgc                                                                                                                                                   <  7:96899/147‑1 (MQ=255)         atgaCCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGa                                                                                                                                         <  2:36398/149‑1 (MQ=255)            aCCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGc                                                                                                                                       <  4:58086/148‑1 (MQ=255)              cATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCGTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGt                                                                                                                                    >  2:198072/1‑149 (MQ=255)              cATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGt                                                                                                                                    >  8:201921/1‑149 (MQ=255)              cATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTCATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGt                                                                                                                                    >  2:94861/1‑149 (MQ=255)               aTCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGtt                                                                                                                                   <  6:149666/149‑1 (MQ=255)                tCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTc                                                                                                                                  <  5:47581/149‑1 (MQ=255)                      aaCTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCGTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGc                                                                                                                            <  1:198072/149‑1 (MQ=255)                            cGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTgcgc                                                                                                                      <  2:310755/149‑1 (MQ=255)                              gTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCgg                                                                                                                    <  5:291425/149‑1 (MQ=255)                                   ccAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCgcctgcccgcgcaagctgtggaacagctcctgggcagg                                                                                                               >  6:227448‑M1/1‑111 (MQ=255)                                      aGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCacctgcccgcgtaagctgtggaacagctcctgggcaggcgc                                                                                                            <  1:24451‑M1/149‑42 (MQ=255)                                        ggTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCgcctgcccgcgcaagctgtggaacagctcctgggcaggcgccg                                                                                                          <  5:227448‑M1/149‑44 (MQ=255)                                          tttACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCaa                                                                                                        <  7:201921/149‑1 (MQ=255)                                              ccTCCGGTATCGATTGCGAGGTCGGCGCCAGGGCGGTGCAGGCGTTGATGCCGGATTACCCCCTCACGCTGGTCTGCATCGCCCGCCACAGCCTCACGGCGCCTGCCCCGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCa                                                                                                     <  5:319767/148‑1 (MQ=255)                                               cTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCacctgcccgcgcaagctgtggaacagctcctgggcaggcgccgtg                                                                                                        >  3:45727‑M1/1‑99 (MQ=255)                                               cTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCacctgcccgcgcaagctgtggaacagctcctgggcaggcgccgtg                                                                                                        <  4:45727‑M1/144‑46 (MQ=255)                                                tACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCATGCAGAc                                                                                                  >  1:114667/1‑149 (MQ=255)                                                  cGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGAc                                                                                                  <  4:64086/147‑1 (MQ=255)                                                              cGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGt                                                                                    >  2:271316/1‑149 (MQ=255)                                                                  ttCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAg                                                                                 <  2:114667/148‑1 (MQ=255)                                                                     gtcgCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAg                                                                                 <  8:157272/145‑1 (MQ=255)                                                                     gtcgCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAg                                                                                 >  7:157272/1‑145 (MQ=255)                                                                                       gAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGt                                                            >  3:6563/1‑148 (MQ=255)                                                                                        aGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTga                                                          <  4:6563/149‑1 (MQ=255)                                                                                              ttCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGgta                                                                         >  5:12528/1‑128 (MQ=255)                                                                                              ttCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGgta                                                                         <  6:12528/128‑1 (MQ=255)                                                                                              ttCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGtt                                                    >  1:172223/1‑149 (MQ=255)                                                                                                  ggATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCtt                                                <  4:263719/149‑1 (MQ=255)                                                                                                        ccccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTa                                          >  7:39667/1‑149 (MQ=255)                                                                                                         cccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGaa                                                                               <  8:53585/111‑1 (MQ=255)                                                                                                         cccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGaa                                                                               >  7:53585/1‑111 (MQ=255)                                                                                                           cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTggg                                                                                      <  5:147191/102‑1 (MQ=255)                                                                                                           cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTggg                                                                                      >  6:147191/1‑102 (MQ=255)                                                                                                             tCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATcgcc                                     <  2:172223/149‑1 (MQ=255)                                                                                                                        tGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAACTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCa                          >  1:242340/1‑149 (MQ=255)                                                                                                                           aTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCg                       >  4:45195/1‑149 (MQ=255)                                                                                                                           aTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCg                       <  8:39667/149‑1 (MQ=255)                                                                                                                           aTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCg                       >  3:71182/1‑149 (MQ=255)                                                                                                                                  gCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGcc                >  4:197319/1‑149 (MQ=255)                                                                                                                                     acaGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGt                                            >  7:266852/1‑118 (MQ=255)                                                                                                                                     acaGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGt                                            <  8:266852/118‑1 (MQ=255)                                                                                                                                          cTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGACAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAgg        >  2:138053/1‑149 (MQ=255)                                                                                                                                           tCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGt       >  3:123320/1‑149 (MQ=255)                                                                                                                                            cACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtag           <  4:45727‑M2/144‑100 (MQ=255)                                                                                                                                            cACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtag           >  3:45727‑M2/1‑45 (MQ=255)                                                                                                                                              cGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGCgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtaggtaaacc    <  5:227448‑M2/149‑107 (MQ=255)                                                                                                                                                gcgcCTGCCCAGGAGCTGTTCCACAGCTTACGCGGGCAGGTgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtaggtaaaccct  <  1:24451‑M2/149‑109 (MQ=255)                                                                                                                                                 |                                                                                                                                                    AATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCG  >  NC_002947/3092746‑3093037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.