New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3092890	39 (0.760)	5 (0.100)	5/256	NT	11.7%	coding (851/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	= 3092929	37 (0.730)					coding (890/939 nt)	PP_2701	LysR family transcriptional regulator

TTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCA  >  NC_002947/3092787‑3093075                                                                                                                                               |                                                                                                                                                    tttACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCaa                                                                                                                                               <  7:201921/149‑1 (MQ=255)     ccTCCGGTATCGATTGCGAGGTCGGCGCCAGGGCGGTGCAGGCGTTGATGCCGGATTACCCCCTCACGCTGGTCTGCATCGCCCGCCACAGCCTCACGGCGCCTGCCCCGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCa                                                                                                                                            <  5:319767/148‑1 (MQ=255)       tACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCATGCAGAc                                                                                                                                         >  1:114667/1‑149 (MQ=255)         cGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGAc                                                                                                                                         <  4:64086/147‑1 (MQ=255)                     cGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGt                                                                                                                           >  2:271316/1‑149 (MQ=255)                         ttCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAg                                                                                                                        <  2:114667/148‑1 (MQ=255)                            gtcgCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAg                                                                                                                        >  7:157272/1‑145 (MQ=255)                            gtcgCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAg                                                                                                                        <  8:157272/145‑1 (MQ=255)                                              gAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGt                                                                                                   >  3:6563/1‑148 (MQ=255)                                               aGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTga                                                                                                 <  4:6563/149‑1 (MQ=255)                                                     ttCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGgta                                                                                                                <  6:12528/128‑1 (MQ=255)                                                     ttCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGgta                                                                                                                >  5:12528/1‑128 (MQ=255)                                                     ttCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGtt                                                                                           >  1:172223/1‑149 (MQ=255)                                                         ggATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCtt                                                                                       <  4:263719/149‑1 (MQ=255)                                                               ccccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTa                                                                                >  7:39667/1‑149 (MQ=255)                                                                cccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGaa                                                                                                                      <  8:53585/111‑1 (MQ=255)                                                                cccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGaa                                                                                                                      >  7:53585/1‑111 (MQ=255)                                                                  cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTggg                                                                                                                             >  6:147191/1‑102 (MQ=255)                                                                  cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTggg                                                                                                                             <  5:147191/102‑1 (MQ=255)                                                                    tCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATcgcc                                                                           <  2:172223/149‑1 (MQ=255)                                                                               tGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAACTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCa                                                                >  1:242340/1‑149 (MQ=255)                                                                                  aTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCg                                                             >  3:71182/1‑149 (MQ=255)                                                                                  aTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCg                                                             <  8:39667/149‑1 (MQ=255)                                                                                  aTCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCg                                                             >  4:45195/1‑149 (MQ=255)                                                                                         gCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGcc                                                      >  4:197319/1‑149 (MQ=255)                                                                                            acaGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑Gt                                                                                  <  8:266852/118‑1 (MQ=255)                                                                                            acaGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑Gt                                                                                  >  7:266852/1‑118 (MQ=255)                                                                                                 cTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGACAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAgg                                              >  2:138053/1‑149 (MQ=255)                                                                                                  tCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGt                                             >  3:123320/1‑149 (MQ=255)                                                                                                   cACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtag                                                  >  3:45727‑M2/1‑45 (MQ=255)                                                                                                   cACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtag                                                  <  4:45727‑M2/144‑100 (MQ=255)                                                                                                     cGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGCgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtaggtaaacc                                           <  5:227448‑M2/149‑107 (MQ=255)                                                                                                       gcgcCTGCCCAGGAGCTGTTCCACAGCTTACGCGGGCAGGTgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtaggtaaaccct                                         <  1:24451‑M2/149‑109 (MQ=255)                                                                                                          ccTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGCgccgtgaggctgtggcggtcgatgcagaccagattgatggggtaatccggaatcaactcctgcaccgccatggcgacgaactcgcaatcgataccgtaggtaaacccttgg                                      >  6:227448‑M2/1‑38 (MQ=255)                                                                                                               ccAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGgcg                                >  6:205602/1‑149 (MQ=255)                                                                                                                    aGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTg                           <  3:197319/149‑1 (MQ=255)                                                                                                                     gCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTgg                          >  6:193978/1‑149 (MQ=255)                                                                                                                         ttCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGCATTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGTCGCGCTGGTTg                       <  1:94861/149‑1 (MQ=255)                                                                                                                         ttCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTgg                      <  2:242340/149‑1 (MQ=255)                                                                                                                           ccACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTTGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGc                     <  2:117529/148‑1 (MQ=255)                                                                                                                             aaaGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTCGGGTCAGAAGTgg                                                                                                                  >  5:296499/3‑54 (MQ=255)                                                                                                                              caGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGAt                  >  2:279462/1‑148 (MQ=255)                                                                                                                                    gcgcGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGcc            <  4:71182/148‑1 (MQ=255)                                                                                                                                        ggacAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGc       <  1:138053/146‑1 (MQ=255)                                                                                                                                              gTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCa  >  5:225723/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                    TTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGG‑GTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCA  >  NC_002947/3092787‑3093075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.