| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3337342 = | 33 (0.640) | 3 (0.060) | 3/236 | NT | 9.8% | coding (546/1047 nt) | PP_2934 | hypothetical protein |
| ? | NC_002947 | 3337387 = | 25 (0.530) | coding (591/1047 nt) | PP_2934 | hypothetical protein | |||||
TTGCAAGTCAGCGCGGCGATCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTG > NC_002947/3337199‑3337489 | gtgcgggtacctgcaccccggccagcgcatggcgcccgaacaacaggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCt < 6:196808‑M1/6‑1 (MQ=255)gtgcgggtacctgcaccccggccagcgcatggcgcccgaacaacaggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCt > 3:120204‑M1/144‑149 (MQ=255) aGCGCGGCGATCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTa < 4:239773/149‑1 (MQ=255) gcgcGGCGATCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTTTCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTAc > 6:326234/1‑149 (MQ=255) cggcgATCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGTATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGc > 8:162612/1‑149 (MQ=255) gcgATCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCt < 3:266882/149‑1 (MQ=255) aTCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTg > 5:82637/1‑147 (MQ=255) aTCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGa < 7:131320/149‑1 (MQ=255) aGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGc < 3:289512/149‑1 (MQ=255) cgcgTGATGATGCAGTGGTCGGGCCTTATCTGTATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCAt < 7:162612/149‑1 (MQ=255) cgcgTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCAt > 2:44279/1‑149 (MQ=255) gcgTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATg > 8:123502/1‑149 (MQ=255) gTGATGATGCAGTGCTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCCGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTTGAGCGTCTGCGTCTGTACTGCCTGGAGCGTCCGGATGAc < 3:82904/149‑1 (MQ=255) gaacaacaggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGAc > 7:177181‑M1/107‑149 (MQ=255) caggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCTGc > 3:24676‑M1/101‑108 (MQ=255) caggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCTGc < 4:24676‑M1/8‑1 (MQ=255) caggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTg < 1:215162‑M1/48‑1 (MQ=255) caggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGc > 2:215162‑M1/101‑149 (MQ=255) gTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCaa < 3:126269/149‑1 (MQ=255) gggCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGa < 7:23377/148‑1 (MQ=255) cTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCAc < 7:123502/149‑1 (MQ=255) gAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATAc > 5:196808/1‑149 (MQ=255) atcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGc > 1:135422‑M1/85‑86 (MQ=255) atcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGc < 2:135422‑M1/2‑1 (MQ=255) ggCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGAtt > 7:204063/1‑147 (MQ=255) ggCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGAtt < 8:204063/147‑1 (MQ=255) ggCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGc < 5:326234/149‑1 (MQ=255) ggCAAGGTGGGTGTGATCGGCTACTCCGCCGGCGGAGAAACAGCGTTGATCCTGTCTCGCGCACGCCACGACCTCGAGCGACTGCGTCAGTACtcc > 4:84179/1‑94 (MQ=255) ggCAACGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGc < 3:84179/96‑1 (MQ=255) aTCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACt > 5:106089/1‑149 (MQ=255) ggcggAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAgaccga > 1:149636/1‑149 (MQ=255) aaCCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAg > 7:148669/1‑149 (MQ=255) cgcgTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTgg < 2:172255/149‑1 (MQ=255) cgTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTgggg < 2:149636/149‑1 (MQ=255) gTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTggggg > 8:12685/1‑149 (MQ=255) gTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTggggg > 8:95818/1‑149 (MQ=255) tGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGa > 2:224671/1‑149 (MQ=255) aCGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGa > 6:200334/1‑143 (MQ=255) aCGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGa < 5:200334/143‑1 (MQ=255) cccGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCt > 7:73115/1‑149 (MQ=255) gACCTGGAGCGGCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGa < 1:224671/149‑1 (MQ=255) aCCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGc < 8:148669/149‑1 (MQ=255) aGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtgttg < 6:82637/149‑1 (MQ=255) | TTGCAAGTCAGCGCGGCGATCACCGCAGCGCGTGATGATGCAGTGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTG > NC_002947/3337199‑3337489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |