New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3337342 =	33 (0.640)	3 (0.060)	3/236	NT	9.8%	coding (546/1047 nt)	PP_2934	hypothetical protein
	?	NC_002947	3337387 =	25 (0.530)					coding (591/1047 nt)	PP_2934	hypothetical protein

TGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCAC  >  NC_002947/3337242‑3337529                                                                                                                                                  |                                                                                                                                                caggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTg                                                                                                                                               <  1:215162‑M1/48‑1 (MQ=255) caggctcagcggcgccatcaacatgaccgcccccactcgcgggtcggtctcgggcgccagttcgctgcggtcggcaatcagtatgccgtgggtcttgcagGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGc                                                                                                                                              >  2:215162‑M1/101‑149 (MQ=255)   gTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCaa                                                                                                                                            <  3:126269/149‑1 (MQ=255)      gggCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGa                                                                                                                                          <  7:23377/148‑1 (MQ=255)          cTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCAc                                                                                                                                     <  7:123502/149‑1 (MQ=255)                 gAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATAc                                                                                                                              >  5:196808/1‑149 (MQ=255)                        ggCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGAtt                                                                                                                         <  8:204063/147‑1 (MQ=255)                        ggCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGAtt                                                                                                                         >  7:204063/1‑147 (MQ=255)                        ggCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGc                                                                                                                       <  5:326234/149‑1 (MQ=255)                                       aTCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACt                                                                                                        >  5:106089/1‑149 (MQ=255)                                                      ggcggAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAgaccga                                                                                         >  1:149636/1‑149 (MQ=255)                                                              aaCCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAg                                                                                >  7:148669/1‑149 (MQ=255)                                                                 cgcgTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTgg                                                                             <  2:172255/149‑1 (MQ=255)                                                                   cgTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTgggg                                                                           <  2:149636/149‑1 (MQ=255)                                                                    gTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTggggg                                                                          >  8:95818/1‑149 (MQ=255)                                                                    gTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTggggg                                                                          >  8:12685/1‑149 (MQ=255)                                                                                tGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGa                                                              >  2:224671/1‑149 (MQ=255)                                                                                      aCGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGa                                                              <  5:200334/143‑1 (MQ=255)                                                                                      aCGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGa                                                              >  6:200334/1‑143 (MQ=255)                                                                                          cccGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCt                                                    >  7:73115/1‑149 (MQ=255)                                                                                             gACCTGGAGCGGCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGACCCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGa                                                  <  1:224671/149‑1 (MQ=255)                                                                                              aCCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGc                                                <  8:148669/149‑1 (MQ=255)                                                                                                 gcaggcgtctgcgtcatgcggacgctccaggcagtactgacgcagacgcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtg                                             >  2:215162‑M2/50‑149 (MQ=255)                                                                                                  caggcgtctgcgtcatgcggacgctccaggcagtactgacgcagacgcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtg                                             <  1:215162‑M2/100‑1 (MQ=255)                                                                                                    aGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtgttg                                          <  6:82637/149‑1 (MQ=255)                                                                                                       gtctgcgtcatgcggacgctccaggcagtactgacgcagacgcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTc                                       >  7:177181‑M2/44‑149 (MQ=255)                                                                                                          TGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCggg                                    <  1:298001‑M1/149‑1 (MQ=255)                                                                                                              TCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGgcgc                                 <  6:70058‑M1/148‑1 (MQ=255)                                                                                                              TCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGcc                                >  7:12685‑M1/1‑149 (MQ=255)                                                                                                                       ccTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTgg                       >  1:269784/1‑149 (MQ=255)                                                                                                                            aGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCggg                  <  5:63858/149‑1 (MQ=255)                                                                                                                              cGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCggg                  <  7:181627/147‑1 (MQ=255)                                                                                                                              cGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCggg                  >  8:181627/1‑147 (MQ=255)                                                                                                                                   gCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAgg           <  7:95818/149‑1 (MQ=255)                                                                                                                                          gcagacgcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtg                                             >  3:24676‑M2/9‑108 (MQ=255)                                                                                                                                          gcagacgcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCtg                                             <  4:24676‑M2/100‑1 (MQ=255)                                                                                                                                            agacgcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCAc  >  3:120204‑M2/7‑149 (MQ=255)                                                                                                                                            agacgcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCAc  <  6:196808‑M2/143‑1 (MQ=255)                                                                                                                                                gcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGAt                                                             >  1:135422‑M2/3‑86 (MQ=255)                                                                                                                                                gcCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGAt                                                             <  2:135422‑M2/84‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                TGGTCGGGCCTTATCTGAATGACGGCAAGGTGGGTGTGATCGGCTACTCGGCCGGCGGAGAAACCGCGTTGATCCTGTCTGGCGCACGCCCCGACCTGGAGCGTCTGCGTCAGTACTGCCTGGAGCGTCCGCATGACGCAGACGCCTGCAAGACCCACGGCATACTGATTGCCGACCGCAGCGAACTGGCGCCCGAGACCGA‑CCCGCGAGTGGGGGCGGTCATGTTGATGGCGCCGCTGAGCCTGTTGTTCGGGCGCCATGCGCTGGCCGGGGTGCAGGTACCCGCAC  >  NC_002947/3337242‑3337529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.