New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3790971 =33 (0.640)3 (0.060) 3/248 NT 7.8% coding (415/1026 nt) PP_3353 sulfatase‑modifying protein
?NC_002947 3791040 = 39 (0.790)coding (484/1026 nt) PP_3353 sulfatase‑modifying protein

CAACGCCCAGTTCGCGCGCTTCGTCAAGGCCACGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGAAGATGCCCAGGCCTATGCCCGCTGGGCAGGCCGCGAACTGCC  >  NC_002947/3790823‑3791116
                                                                                                                                                    |                                                                                                                                                 
cAACGCCCAGTTCGCGCGCTTCGTCAAGGCCACGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGcc                                                                                                                                                   >  1:81054/1‑149 (MQ=255)
 ggtggtaccccagctgaagtcggcatcggtcaggccgccgcgcatggcgtattccagctgcgcctcgctgggcagttcgcggcctgcccagcgggcataggcctgggcatcttccagggcgatctgcaccaccggatggttgtccagcc                                                                                                                                                  >  1:317450‑M1/148‑149 (MQ=255)
 ggtggtaccccagctgaagtcggcatcggtcaggccgccgcgcatggcgtattccagctgcgcctcgctgggcagttcgcggcctgcccagcgggcataggcctgggcatcttccagggcgatctgcaccaccggatggttgtccagcc                                                                                                                                                  >  2:162628‑M1/148‑149 (MQ=255)
       accccagctgaagtcggcatcggtcaggccgccgcgcatggcgtattccagctgcgcctcgctgggcagttcgcggcctgcccagcgggcataggcctgggcatcttccagggcgatctgcaccaccggatggttgtccagCCCGGc                                                                                                                                              <  2:188202‑M1/6‑1 (MQ=255)
          ttCGCGCGCTTCGTCAAGGCCACGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCa                                                                                                                                         <  2:169335/149‑1 (MQ=255)
                       tCAAGGCCACGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGgc                                                                                                                            <  2:81054/149‑1 (MQ=255)
                          aGGCCACGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGgcgc                                                                                                                          >  3:155953/1‑148 (MQ=255)
                              cACGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACt                                                                                                                     >  7:120083/1‑149 (MQ=255)
                                cGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTgg                                                                                                                   <  4:61109/149‑1 (MQ=255)
                                         tCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCg                                                                                                          >  6:313968/1‑149 (MQ=255)
                                          cACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCa                                                                                                                                         >  1:206963/1‑117 (MQ=255)
                                          cACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCa                                                                                                                                         <  2:206963/117‑1 (MQ=255)
                                            cccATGCCGAGCGCGGTACCCGTGTCTAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGc                                                                                                         >  1:177031/1‑147 (MQ=255)
                                             ccATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAg                                                                                                      >  3:303065/1‑149 (MQ=255)
                                             ccATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAg                                                                                                      >  5:178100/1‑149 (MQ=255)
                                                    ttccagctgcgcctcgcttggcagttcgcggcctgcccagcgggcataggcctgggcatcttccagggcgatctgcaccaccggatggttgtccagCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAATGGCCgg                                                                                                >  7:230013‑M1/97‑148 (MQ=255)
                                                          ggTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGcagcag                                                                                         >  5:79937/1‑149 (MQ=255)
                                                                       ggcagttcgcggcctgcccagcgggcataggcctgggcatcttccagggcgatctgcaccaccggatggttgtccagCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGc                                                                              >  1:160505‑M1/78‑147 (MQ=255)
                                                                       ggcagttcgcggcctgcccagcgggcataggcctgggcatcttccagggcgatctgcaccaccggatggttgtccagCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCt                                                                             >  3:138255‑M1/78‑148 (MQ=255)
                                                                         gacgacCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGa                                                                          <  5:313968/149‑1 (MQ=255)
                                                                            gacCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACaa                                                                       <  6:79937/149‑1 (MQ=255)
                                                                               cctgccctgcCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAAcc                                                                     >  4:37066/1‑148 (MQ=255)
                                                                                   ccctgcccGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATc                                                                  <  8:120083/147‑1 (MQ=255)
                                                                                   ccctgcccGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCg                                                                <  2:177031/149‑1 (MQ=255)
                                                                                    cctgcccGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCgg                                                               >  3:260547/1‑149 (MQ=255)
                                                                                        cccGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCggtggt                                                           <  3:37066/149‑1 (MQ=255)
                                                                                        cccGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCggtg                                                             <  4:260547/147‑1 (MQ=255)
                                                                                                gcTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCggg                                                                               >  6:272359/1‑121 (MQ=255)
                                                                                                gcTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCggg                                                                               <  5:272359/121‑1 (MQ=255)
                                                                                                        tACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGaa                                           <  4:303065/149‑1 (MQ=255)
                                                                                                          ccGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACaa                                                                       >  6:104770/1‑119 (MQ=255)
                                                                                                          ccGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACaa                                                                       <  5:104770/119‑1 (MQ=255)
                                                                                                           cGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGc                                                                              >  7:117889/1‑111 (MQ=255)
                                                                                                           cGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGc                                                                              <  8:117889/111‑1 (MQ=255)
                                                                                                           cGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGAAGAt                                        <  4:101438/149‑1 (MQ=255)
                                                                                                                           tcatcaGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCa                                                        <  2:212488/117‑1 (MQ=255)
                                                                                                                           tcatcaGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCa                                                        >  1:212488/1‑117 (MQ=255)
                                                                                                                                   gTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGAAGATGCCCAGGCCTATGCCCGCTggg                  >  4:108278/1‑147 (MQ=255)
                                                                                                                                       ggACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGAAGATGCCCAGGCCTATGCCCGCTGGGCAGGcc            >  3:212636/1‑149 (MQ=255)
                                                                                                                                       ggACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGAAGATGCCCAGGCCTATGCCCGCTGGGCAGGcc            >  7:129227/1‑149 (MQ=255)
                                                                                                                                                   ccccGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGAAGATGCCCAGGCCTATGCCCGCTGGGCAGGCCACGAACTGcc  >  4:114014/1‑147 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
CAACGCCCAGTTCGCGCGCTTCGTCAAGGCCACGGGGTATGTCACCCATGCCGAGCGCGGTACCCGTGTCGAGGACGACCCTGCCCTGCCCGACGCGCTGCGGATACCGGGTGCGATGGTGTTTCATCAGGGTGCGGACGTGCTCGGCCCCGGCTGGCAGTTCGTGCCCGGCGCCAACTGGCGACACCCGCAAGGGCCGGGCAGCAGCCTGGCCGGGCTGGACAACCATCCGGTGGTGCAGATCGCCCTGGAAGATGCCCAGGCCTATGCCCGCTGGGCAGGCCGCGAACTGCC  >  NC_002947/3790823‑3791116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.