New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3792154 =	43 (0.830)	3 (0.060)	3/246	NT	7.4%	coding (1164/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	3792203 =	34 (0.700)					coding (1115/1755 nt)	PP_3354	acyl‑CoA dehydrogenase

GTAGATCATCGCGATGCGGCTGTCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGG  >  NC_002947/3792007‑3792297                                                                                                                                                    |                                                                                                                                                 gTAGATCATCGCGATGCGGCTGTCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAgcg                                                                                                                                                 >  7:43717/1‑149 (MQ=255) gTAGATCATCGCGATGCGGCTGTCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAgcg                                                                                                                                                 >  6:336507/1‑149 (MQ=255)  tAGATCATCGCGATGCGGCTGTCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAgcgc                                                                                                                                                >  6:71933/1‑149 (MQ=255)           gcgATGCGGCTGTCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGt                                                                                                                                       >  4:106430/1‑149 (MQ=255)           gcgATGCGGCTGTCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGt                                                                                                                                       <  2:314242/149‑1 (MQ=255)                       tCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCg                                                                                                                           <  3:146219/148‑1 (MQ=255)                                   tGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAgg                                                                                                              >  2:14720/1‑149 (MQ=255)                                     cTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGc                                                                                                             <  5:71933/148‑1 (MQ=255)                                        gATGGCAAACTCCTGGGTCTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGGGAAGGCCGCGTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTc                                                                                                           <  3:287755/147‑1 (MQ=255)                                         aTGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCCAGCCTTCGCCCGTTGTGCAGGCTCGa                                                                                                         <  1:14720/149‑1 (MQ=255)                                            gCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGt                                                                                                                      >  7:242849/1‑132 (MQ=255)                                            gCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGt                                                                                                                      <  8:242849/132‑1 (MQ=255)                                               ctgcacccggccatgcgtcgggtcttgctggagttgcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgaCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACggcggc                                                                                                  <  6:264327‑M1/48‑1 (MQ=255)                                                  tCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGtt                                                                                                                     >  6:236700/1‑127 (MQ=255)                                                  tCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGtt                                                                                                                     <  5:236700/127‑1 (MQ=255)                                                  tCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTc                                                                                               >  7:294856/1‑149 (MQ=255)                                                  catccggccatgcgtcgggtcttgctggagttgcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgaCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGt                                                                                                >  2:99284‑M1/99‑148 (MQ=255)                                                   acccggccatgcgtcgggtcttgctggagttgcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgaCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCg                                                                                              >  5:264327‑M1/98‑149 (MQ=255)                                                    cTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCgg                                                                                             >  4:77840/1‑149 (MQ=255)                                                     tGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGc                                                                                            >  6:69689/1‑149 (MQ=255)                                                       ggTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGc                                                                                            <  8:294856/147‑1 (MQ=255)                                                              ccatagccaCCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAg                                                                                   >  1:184671/1‑149 (MQ=255)                                                              ccatagccaCCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAg                                                                                   >  3:37471/1‑149 (MQ=255)                                                                     caCCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTgg                                                                            <  7:234142/149‑1 (MQ=255)                                                                          aaCACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGt                                                                       >  1:162300/1‑149 (MQ=255)                                                                              ccTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAg                                                                   <  1:8576/149‑1 (MQ=255)                                                                               cTGCAAGGCCTTGCTTGCCAGGCTGACCCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAg                                                                   >  5:61447/1‑148 (MQ=255)                                                                               cTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGAcggcg                                                                                                    >  1:17852/1‑115 (MQ=255)                                                                               cTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGAcggcg                                                                                                    <  2:17852/115‑1 (MQ=255)                                                                               cTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGt                                                                  <  3:77840/149‑1 (MQ=255)                                                                               cTGCAAGCCCTTGATTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGATGTGCAGGCTAGACGGCTGCGTCGCCGATATCCAGCCACTGGGCCGTCCAg                                                                   >  2:247956/1‑148 (MQ=255)                                                                                  cAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAgg                                                               >  5:56576/1‑149 (MQ=255)                                                                                  cAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAgg                                                               >  1:57787/1‑149 (MQ=255)                                                                                     ggCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTTCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTc                                                                      >  5:154815/1‑139 (MQ=255)                                                                                     ggCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTTCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTc                                                                      <  6:154815/139‑1 (MQ=255)                                                                                      gCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAg                                                           >  2:257331/1‑149 (MQ=255)                                                                                              tgcCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CCGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGGGATCTCCAGCCACGGGGCCGGCCAGTAGGCCAGCGCGCGCa                                                   >  2:248478/1‑149 (MQ=255)                                                                                                 cAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCgg                                                                                             <  6:292644/104‑1 (MQ=255)                                                                                                  aGGCTGAACCCCTGCTCGGTGAACGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTCTGCAGGCTCCACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCAAGAGCGCGCATacc                                               >  8:302052/1‑149 (MQ=255)                                                                                                       gAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGc                                                                                  <  2:281515/109‑1 (MQ=255)                                                                                                       gAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGc                                                                                  >  1:281515/1‑109 (MQ=255)                                                                                                        aaCCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCgg                                          <  7:302052/148‑1 (MQ=255)                                                                                                                         ggCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCa                        <  5:69689/149‑1 (MQ=255)                                                                                                                           ccgccTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGc                      <  4:37471/149‑1 (MQ=255)                                                                                                                           ccgccTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGc                      <  6:129717/149‑1 (MQ=255)                                                                                                                                    cGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGa             <  2:184671/149‑1 (MQ=255)                                                                                                                                     gATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCTAGCGCGCGCATCCCCTCGGTCCGCACCCGCAACTCCAGCAAGACCCGAc            <  1:247956/149‑1 (MQ=255)                                                                                                                                             tCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGcc    >  1:51915/1‑149 (MQ=255)                                                                                                                                              cAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCg   >  4:215214/1‑149 (MQ=255)                                                                                                                                               aaCAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGACCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCgg  >  7:159513/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                 GTAGATCATCGCGATGCGGCTGTCGCGCAAGGTCTGCTCGATGGCAAACTCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCG‑CAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCGATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGG  >  NC_002947/3792007‑3792297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.