New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3792154 =	43 (0.830)	3 (0.060)	3/246	NT	7.4%	coding (1164/1755 nt)	PP_3354	acyl‑CoA dehydrogenase
	?	NC_002947	3792203 =	34 (0.700)					coding (1115/1755 nt)	PP_3354	acyl‑CoA dehydrogenase

TCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGC  >  NC_002947/3792056‑3792339                                                                                                                                                    |                                                                                                                                          tCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTc                                                                                                                                          >  7:294856/1‑149 (MQ=255) catccggccatgcgtcgggtcttgctggagttgcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgaCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGt                                                                                                                                           >  2:99284‑M1/99‑148 (MQ=255)  acccggccatgcgtcgggtcttgctggagttgcgggtgcgtaccgaggggatgcgcgcgctggcctactggacggcccagtggctggatatcgccgaCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCg                                                                                                                                         >  5:264327‑M1/98‑149 (MQ=255)   cTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCgg                                                                                                                                        >  4:77840/1‑149 (MQ=255)    tGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGc                                                                                                                                       >  6:69689/1‑149 (MQ=255)      ggTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGc                                                                                                                                       <  8:294856/147‑1 (MQ=255)             ccatagccaCCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAg                                                                                                                             >  1:184671/1‑149 (MQ=255)             ccatagccaCCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAg                                                                                                                             >  3:37471/1‑149 (MQ=255)                    caCCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTgg                                                                                                                      <  7:234142/149‑1 (MQ=255)                         aaCACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGt                                                                                                                 >  1:162300/1‑149 (MQ=255)                             ccTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAg                                                                                                             <  1:8576/149‑1 (MQ=255)                              cTGCAAGGCCTTGCTTGCCAGGCTGACCCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAg                                                                                                             >  5:61447/1‑148 (MQ=255)                              cTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGt                                                                                                            <  3:77840/149‑1 (MQ=255)                              cTGCAAGCCCTTGATTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGATGTGCAGGCTAGACGGCTGCGTCGCCG‑ATATCCAGCCACTGGGCCGTCCAg                                                                                                             >  2:247956/1‑148 (MQ=255)                                 cAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAgg                                                                                                         >  5:56576/1‑149 (MQ=255)                                 cAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAgg                                                                                                         >  1:57787/1‑149 (MQ=255)                                    ggCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTTCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTc                                                                                                                <  6:154815/139‑1 (MQ=255)                                    ggCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTTCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTc                                                                                                                >  5:154815/1‑139 (MQ=255)                                     gCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAg                                                                                                     >  2:257331/1‑149 (MQ=255)                                             tgcCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCCGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGGG‑ATCTCCAGCCACGGGGCCGGCCAGTAGGCCAGCGCGCGCa                                                                                             >  2:248478/1‑149 (MQ=255)                                                cAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCgg                                                                                                                                        <  6:292644/104‑1 (MQ=255)                                                 aGGCTGAACCCCTGCTCGGTGAACGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTCTGCAGGCTCCACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCAAGAGCGCGCATacc                                                                                         >  8:302052/1‑149 (MQ=255)                                                      gAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGc                                                                                                                            <  2:281515/109‑1 (MQ=255)                                                      gAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGc                                                                                                                            >  1:281515/1‑109 (MQ=255)                                                       aaCCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCgg                                                                                    <  7:302052/148‑1 (MQ=255)                                                                        ggCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCa                                                                  <  5:69689/149‑1 (MQ=255)                                                                          ccgccTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGc                                                                <  6:129717/149‑1 (MQ=255)                                                                          ccgccTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGc                                                                <  4:37471/149‑1 (MQ=255)                                                                                   cGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGa                                                       <  2:184671/149‑1 (MQ=255)                                                                                    gATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCTAGCGCGCGCATCCCCTCGGTCCGCACCCGCAACTCCAGCAAGACCCGAc                                                      <  1:247956/149‑1 (MQ=255)                                                                                            tCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGcc                                              >  1:51915/1‑149 (MQ=255)                                                                                             cAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCg                                             >  4:215214/1‑149 (MQ=255)                                                                                              aaCAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGACCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCgg                                            >  7:159513/1‑149 (MQ=255)                                                                                                cgacgccgccgtcgagcctgcacaacgggcgaaggctgcgacattggcggcgTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGt                                          >  5:264327‑M2/53‑149 (MQ=255)                                                                                                  acgccgccgtcgagcctgcacaacgggcgaaggctgcgacattggcggcgTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGATg                                         >  2:99284‑M2/51‑148 (MQ=255)                                                                                                    gccgccgtcgagcctgcacaacgggcgaaggctgcgacattggcggcgTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAg                                      <  6:264327‑M2/101‑1 (MQ=255)                                                                                                     CCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAACGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAgg                                     <  4:68965‑M1/149‑1 (MQ=255)                                                                                                               cGCAGCCTGCGCCCGTTGGGCAGGCTCGCCGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGt                           <  2:162300/149‑1 (MQ=255)                                                                                                                gCATCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTc                          <  6:133307/149‑1 (MQ=255)                                                                                                                   gCCTTCGCCCGTTGTCCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGgc                       <  7:272135/149‑1 (MQ=255)                                                                                                                           ccGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTggg               <  8:43717/149‑1 (MQ=255)                                                                                                                            cGTTGTGCAGGCTCGACGGCGGCGTCGGCGAATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTc                                                                    >  1:35551/1‑96 (MQ=255)                                                                                                                            cGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTc                                                                    <  2:35551/95‑1 (MQ=255)                                                                                                                                     ggCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCtt     >  7:253807/1‑149 (MQ=255)                                                                                                                                     ggCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAACGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCtt     <  3:68965/149‑1 (MQ=255)                                                                                                                                        tCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGgc  >  3:99122/1‑149 (MQ=255)                                                                                                                                          gACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTgg                <  2:121828/133‑1 (MQ=255)                                                                                                                                          gACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTgg                >  1:121828/1‑133 (MQ=255)                                                                                                                                                    |                                                                                                                                          TCCTGGGTGTAGCCATAGCCACCCAACACCTGCAAGGCCTTGCTTGCCAGGCTGAACCCCTGCTCGGTGAAGGCCGCCTTGACGATGGGGGTCAACAGCGCCGCCAATGTCGCAGCCTTCGCCCGTTGTGCAGGCTCGACGGCGGCGTCGGCG‑ATATCCAGCCACTGGGCCGTCCAGTAGGCCAGCGCGCGCATCCCCTCGGTACGCACCCGCAACTCCAGCAAGACCCGACGCATGGCCGGGTGCAGGTGGATCGGGTCGGCGCCCTGGGCGCCCCCCTTGGC  >  NC_002947/3792056‑3792339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.