New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3912312 =	48 (0.930)	5 (0.100)	5/252	NT	9.3%	coding (658/1092 nt)	PP_3452	GGDEF domain‑containing protein
	?	NC_002947	3912352 =	51 (1.020)					coding (698/1092 nt)	PP_3452	GGDEF domain‑containing protein

ATGCCGTGTTTCTAAGCGGCCTGGTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTGCATATCAAGACAAG  >  NC_002947/3912166‑3912460                                                                                                                                                   |                                                                                                                                                     ttcacctcccagccgggcaaacgcctgatcggccatgcttgtcttgatatgcagggccacgcgcttgagcagttcgtcgaccacgtcatggccgaaacggtctttgacccgcttgaaagtgtcgatatcgatcatggccaggtactGcc                                                                                                                                                    <  6:174572‑M1/3‑1 (MQ=255)    ccGTGTTTCTAAGCGGCCTGGTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGCCCTTCCCAACAGCCGCTCGTTCATGTCCCAg                                                                                                                                                 >  5:174572/1‑149 (MQ=255)      gtgtTTCTAAGCGGCCTGGTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGc                                                                                                                                               >  4:135044/1‑149 (MQ=255)      gtgtTTCTAAGCGGCCTGGTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGc                                                                                                                                               <  7:63599/149‑1 (MQ=255)                    ccTGGTCAGCTACAGCTACCTGCATATCCGCAAGGCCAAGCTCCACAATTTCTACCTGTCCAAGGTGTTGCTGGACCAACCCTACGTCGATGCCCTGACCGACATACCCAACCGCCGCTCGTTCATGGCCCAGGACGACCGCCAGCTGc                                                                                                                                 >  5:334868/1‑149 (MQ=255)                     cTGGTCAGCTACAGCTACCTGCAGATCCGCAAGTCCAAGCTTCACAATTTCTACCTGTCCAAGTTGTTGCTGGAGCAAGCCTACGTGTATGCCCTGACCGACATTCGCAACCGCCGCTCTTTCATGGCCCAGTCCGACCGCCAGCTGCg                                                                                                                                <  6:334868/149‑1 (MQ=255)                        gTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATgg                                                                                                                                                      >  1:40427/1‑124 (MQ=255)                        gTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATgg                                                                                                                                                      <  2:40427/124‑1 (MQ=255)                        gTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGAt                                                                                                                             >  6:286549/1‑149 (MQ=255)                           agctacagctacCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGc                                                                                                                          <  5:54708/149‑1 (MQ=255)                            gctacagctacCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGc                                                                                                                          >  5:114275/1‑148 (MQ=255)                             ctacagctacCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGa                                                                                                                        >  4:163366/1‑149 (MQ=255)                                      ccTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCggg                                                                                                                <  3:163366/148‑1 (MQ=255)                                          tcttgatatgcagggccacgcgcttgagcacttcgtcgcccacgtcatggccgaaacggtcattgacccgcttgaaattgtcgatatcgatcatggccaggtactGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTa                                                                                                           <  2:57105‑M1/44‑1 (MQ=255)                                           cttgatatgcagggccacgcgcttgagcacttcgtcgcccacgtcatggccgaaacggtcattgacccgcttgaaattgtcgatatcgatcatggccaggtactGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTa                                                                                                           >  8:121949‑M1/105‑148 (MQ=255)                                              gatatgcagggccacgcgcttgagcacttcgtcgcccacgtcatggccgaaacggtcattgacccgcttgaaattgtcgatatcgatcatggccaggtactGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTAc                                                                                                          >  1:57105‑M1/102‑146 (MQ=255)                                                     agggccacgcgcttgagcacttcgtcgcccacgtcatggccgaaacggtcattgacccgcttgaaattgtcgatatcgatcatggccaggtactGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCa                                                                                                              >  6:191654‑M1/95‑135 (MQ=255)                                                     agggccacgcgcttgagcacttcgtcgcccacgtcatggccgaaacggtcattgacccgcttgaaattgtcgatatcgatcatggccaggtactGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCa                                                                                                              <  5:191654‑M1/41‑1 (MQ=255)                                                      gCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGAt                                                                                               <  5:286549/149‑1 (MQ=255)                                                           gCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGata                                                                                          <  1:297394/149‑1 (MQ=255)                                                               cacaATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTg                                                                                                                                  <  4:68833/105‑1 (MQ=255)                                                               cacaATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTg                                                                                                                                  >  3:68833/1‑105 (MQ=255)                                                               cacaATTTCTACCGGTCAAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCTACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCg                                                                                       <  8:271319/148‑1 (MQ=255)                                                                  aaTTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGAt                                                                                                                             <  3:70635/107‑1 (MQ=255)                                                                  aaTTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGAt                                                                                                                             >  4:70635/1‑107 (MQ=255)                                                                    tttCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAAtt                                                                                 >  6:158506/1‑149 (MQ=255)                                                                       cTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTc                                                                               <  5:158506/148‑1 (MQ=255)                                                                             gTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTgg                                                                                                      >  5:238306/1‑119 (MQ=255)                                                                             gTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTgg                                                                                                      <  6:238306/119‑1 (MQ=255)                                                                              tCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGt                                                                       <  8:41729/149‑1 (MQ=255)                                                                                cAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTc                                                                      >  2:39128/1‑148 (MQ=255)                                                                                 aaGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCaa                                                                    >  1:213821/1‑149 (MQ=255)                                                                                  aGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCGCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAAt                                                                   <  4:293121/149‑1 (MQ=255)                                                                                      gtTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCTCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCggg                                                                        <  6:297277/140‑1 (MQ=255)                                                                                      gtTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCggg                                                                        >  5:297277/1‑140 (MQ=255)                                                                                             gAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCgg                                                        >  8:159589/1‑149 (MQ=255)                                                                                             gAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCgg                                                        >  1:311090/1‑149 (MQ=255)                                                                                               gCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGc                                                       >  1:164947/1‑148 (MQ=255)                                                                                                cAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCa                                                     >  7:251936/1‑149 (MQ=255)                                                                                                  aGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGATTCGGCCAt                                                    >  7:79242/1‑148 (MQ=255)                                                                                                     cTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGAAGTACCTGGCCAGGATCGATATCGACAATTTCAAGCGGGTCAATGCCCGTTTCGGCCATGACg                                                >  3:173578/1‑149 (MQ=255)                                                                                                        cGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTgg                                             <  1:39128/149‑1 (MQ=255)                                                                                                          tCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGc                                           <  2:213821/149‑1 (MQ=255)                                                                                                                 ccTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAg                                    >  6:45215/1‑149 (MQ=255)                                                                                                                 ccTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAg                                    >  7:294902/1‑149 (MQ=255)                                                                                                                    gACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGc                                 >  7:113284/1‑149 (MQ=255)                                                                                                                     aCCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCt                                <  6:215119/149‑1 (MQ=255)                                                                                                                       cGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTc                               >  2:58773/1‑148 (MQ=255)                                                                                                                                  aCCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGcc                   >  7:280014/1‑149 (MQ=255)                                                                                                                                    cgccgcTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAgc                           <  4:226819/139‑1 (MQ=255)                                                                                                                                    cgccgcTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAgc                           >  3:226819/1‑139 (MQ=255)                                                                                                                                     gccgcTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTg                >  5:104174/1‑149 (MQ=255)                                                                                                                                     gccgcTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTg                >  1:327116/1‑149 (MQ=255)                                                                                                                                     gccgcTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTg                >  6:332651/1‑149 (MQ=255)                                                                                                                                            gTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTGCATATc          <  2:164947/148‑1 (MQ=255)                                                                                                                                             ttCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGAGCTCAAGCGCGTGGCCCTGCATATc          >  2:270536/1‑147 (MQ=255)                                                                                                                                                aTGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTGCATATCAAGa      >  3:25419/1‑148 (MQ=255)                                                                                                                                                   GCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTGCATATCAAGACAAg  >  8:251936‑M1/1‑149 (MQ=255)                                                                                                                                                   GCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTGCATATCAAGACAAg  >  8:294902‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ATGCCGTGTTTCTAAGCGGCCTGGTCAGCTACAGCTACCTGCAGATCCGCAAGGCCAAGCTGCACAATTTCTACCTGTCCAAGGTGTTGCTGGAGCAAGCCTACGTCGATGCCCTGACCGACATTCCCAACCGCCGCTCGTTCATGGCCCAGGCCGACCGCCAGCTGCGGATGGCGACGTCCGGGCAGTACCTGGCCATGATCGATATCGACAATTTCAAGCGGGTCAATGACCGTTTCGGCCATGACGTGGGCGACGAAGTGCTCAAGCGCGTGGCCCTGCATATCAAGACAAG  >  NC_002947/3912166‑3912460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.