New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4012716	33 (0.640)	4 (0.080)	4/246	NT	9.9%	coding (552/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase
	?	NC_002947	= 4012757	42 (0.860)					coding (593/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase

ATGCGCGTGCGCGGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGG  >  NC_002947/4012570‑4012864                                                                                                                                                      |                                                                                                                                                     aTGCGCGTGCGCGGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGc                                                                                                                                                    <  7:92708/149‑1 (MQ=255)          cgcgGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCGGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGacac                                                                                                                                           <  7:70906/149‑1 (MQ=255)                  tgtgTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGcc                                                                                                                                   <  3:221102/149‑1 (MQ=255)                    tgtCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCt                                                                                                                                  <  3:88484/148‑1 (MQ=255)                      tCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGt                                                                                                                                >  1:73463/1‑149 (MQ=255)                        gtgtgtGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGCGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTc                                                                                                                              >  1:16957/1‑148 (MQ=255)                           tgtgCTTGGCTGCCCTTACGAGGGCAATGTCAGCGCCGTGCA‑TGTGGCCCCGGGTGCCCGCGCCCTGCACGACATGGGCTGGTACCCGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGa                                                                                                                            <  1:98913/149‑1 (MQ=255)                            gtgCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACTCGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGa                                                                                                                            <  1:94932/148‑1 (MQ=255)                             tgCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAggtg                                                                                                                        <  2:73463/149‑1 (MQ=255)                               cTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAggtggt                                                                                                                      >  7:3840/1‑149 (MQ=255)                                ttGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCtgggccgacaccacctcgaacaggcgtcgggtg                                                                                                                     >  5:333969‑M1/1‑116 (MQ=255)                                         cTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTTCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                            >  2:16957‑M2/1‑148 (MQ=255)                                         cTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                            >  8:3840‑M2/1‑148 (MQ=255)                                         cTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCCCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                            <  5:281858‑M2/149‑2 (MQ=255)                                          ttACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCCCGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGCCACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAgg                                                                                                           <  7:199663‑M2/149‑3 (MQ=255)                                            ccgAGGGCAAGGTCAGCGCCGTGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                            >  8:199663‑M2/2‑145 (MQ=255)                                                   cAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCtgggccgacaccacctcgaacaggcgtcgggtgtcgcctgcggtaccggtgc                                                                                                  <  6:333969‑M1/149‑53 (MQ=255)                                                      ggTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCtgggccgacaccacctcgaacaggcgtcgggtgtcgcctgcggtaccggtgccga                                                                                               >  6:91869‑M1/1‑94 (MQ=255)                                                      ggTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGc                                                                                               <  5:183428/149‑1 (MQ=255)                                                        tCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCtgggccgacaccacctcgaacaggcgtcgggtgtcgcctgcggtaccggtgccgatg                                                                                             <  5:91869‑M1/149‑58 (MQ=255)                                                              ccGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGcc                                                                                       >  5:87761/1‑149 (MQ=255)                                                                             ccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGa                                                                         <  8:107391/149‑1 (MQ=255)                                                                             ccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGa                                                                         <  4:269896/149‑1 (MQ=255)                                                                                     ccGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACg                                                                 >  2:51594/1‑149 (MQ=255)                                                                                            cTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGc                                                          <  7:410/149‑1 (MQ=255)                                                                                            cTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGc                                                          >  8:226919/1‑149 (MQ=255)                                                                                             tGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGcc                                                         >  4:305539/1‑149 (MQ=255)                                                                                                 cGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTgg                                                     <  5:82866/149‑1 (MQ=255)                                                                                                     aTGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTaa                                                 >  1:223698/1‑149 (MQ=255)                                                                                                       gggCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                       <  3:201868/141‑1 (MQ=255)                                                                                                       gggCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                       >  4:201868/1‑141 (MQ=255)                                                                                                           tgctA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTa                                           >  5:262335/1‑149 (MQ=255)                                                                                                              tA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                       >  5:42891/1‑134 (MQ=255)                                                                                                              tA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                       <  6:42891/134‑1 (MQ=255)                                                                                                              tA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGc                                        >  3:35114/1‑149 (MQ=255)                                                                                                                    cggTCTCGCCGGGTGACACCATCGGCACCGGTACCGCCGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGc                                    <  4:45596/148‑1 (MQ=255)                                                                                                                       tctcGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACGTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTg                                 >  7:160211/1‑149 (MQ=255)                                                                                                                        ctcGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTcc                                                                             <  3:281362/104‑1 (MQ=255)                                                                                                                        ctcGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTcc                                                                             >  4:281362/1‑104 (MQ=255)                                                                                                                           gCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCt                               <  6:87761/147‑1 (MQ=255)                                                                                                                               ggTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAggg                         <  7:226919/149‑1 (MQ=255)                                                                                                                                      ccATCGGCACCGGTACCTCAGGCGACACCCGACTCCTTTTCGATGTGGTGTCGGCCCAGGTAACTCGCGAGCAGTTGGCCGGACACTTCCATGACACTTAAGGACAGGCATTGGATAACGTCTATGCCATCCTGCTCGAGGGAATCAGc                  <  6:281858/149‑1 (MQ=255)                                                                                                                                       cATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctga                 <  5:91869‑M2/149‑93 (MQ=255)                                                                                                                                         tCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgacc               >  6:91869‑M2/1‑55 (MQ=255)                                                                                                                                            gCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgaccttg            <  6:333969‑M2/149‑98 (MQ=255)                                                                                                                                            gCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTc            >  2:71723/1‑149 (MQ=255)                                                                                                                                                     cctgggccgacaccacctcgaacaggcgtcgggtggcgcctgcggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgggcagggcgcgggccaccggggccacctgctcggcgctgaccttgccctcgtaa   <  7:199663‑M1/149‑148 (MQ=255)                                                                                                                                                      ctgggccgacaccacctcgaacaggcgtcgggtgtcgcctggggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgaccttgccctcgtaag  <  5:281858‑M1/149‑149 (MQ=255)                                                                                                                                                      ctgggccgacaccacctcgaacaggcgtcgggtgtcgcctgcggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgaccttgccctcgtaag  >  8:3840‑M1/1‑1 (MQ=255)                                                                                                                                                      ctgggccgacaccacctcgaacaggcgtcgggtgtcgcctgcggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgcacggcgctgaccttgccctcgg     >  8:199663‑M1/1‑1 (MQ=255)                                                                                                                                                      ctgggccgacaccacctcgaacaggcgtcgggtgtcgcctgcggtaccggtgccgatggtgtcacccagcgagacctcgtagaagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgaccttgccctcgtaag  >  2:16957‑M1/1‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     ATGCGCGTGCGCGGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCA‑GGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTA‑‑CGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGG  >  NC_002947/4012570‑4012864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.