New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4012716	33 (0.640)	4 (0.080)	4/246	NT	9.9%	coding (552/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase
	?	NC_002947	= 4012757	42 (0.860)					coding (593/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase

CTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGCCCTTACGCCAAGGGTG  >  NC_002947/4012610‑4012900                                                                                                                                                    |                                                                                                                                                cTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTTCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                                                                >  2:16957‑M2/1‑148 (MQ=255) cTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                                                                >  8:3840‑M2/1‑148 (MQ=255) cTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCCCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                                                                <  5:281858‑M2/149‑2 (MQ=255)  ttACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCCCGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGCCACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAgg                                                                                                                                               <  7:199663‑M2/149‑3 (MQ=255)    ccgAGGGCAAGGTCAGCGCCGTGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                                                                >  8:199663‑M2/2‑145 (MQ=255)              ggTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGc                                                                                                                                   <  5:183428/149‑1 (MQ=255)                      ccGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGcc                                                                                                                           >  5:87761/1‑149 (MQ=255)                                    ccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGa                                                                                                             <  8:107391/149‑1 (MQ=255)                                    ccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGa                                                                                                             <  4:269896/149‑1 (MQ=255)                                            ccGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACg                                                                                                     >  2:51594/1‑149 (MQ=255)                                                   cTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGc                                                                                              >  8:226919/1‑149 (MQ=255)                                                   cTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGc                                                                                              <  7:410/149‑1 (MQ=255)                                                    tGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGcc                                                                                             >  4:305539/1‑149 (MQ=255)                                                        cGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTgg                                                                                         <  5:82866/149‑1 (MQ=255)                                                            aTGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTaa                                                                                     >  1:223698/1‑149 (MQ=255)                                                              gggCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                                                           >  4:201868/1‑141 (MQ=255)                                                              gggCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                                                           <  3:201868/141‑1 (MQ=255)                                                                  tgctACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTa                                                                               >  5:262335/1‑149 (MQ=255)                                                                     tACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                                                           <  6:42891/134‑1 (MQ=255)                                                                     tACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                                                           >  5:42891/1‑134 (MQ=255)                                                                     tACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGc                                                                            >  3:35114/1‑149 (MQ=255)                                                                         cggTCTCGCCGGGTGACACCATCGGCACCGGTACCGCCGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGc                                                                        <  4:45596/148‑1 (MQ=255)                                                                            tctcGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACGTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTg                                                                     >  7:160211/1‑149 (MQ=255)                                                                             ctcGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTcc                                                                                                                 >  4:281362/1‑104 (MQ=255)                                                                             ctcGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTcc                                                                                                                 <  3:281362/104‑1 (MQ=255)                                                                                gCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCt                                                                   <  6:87761/147‑1 (MQ=255)                                                                                    ggTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAggg                                                             <  7:226919/149‑1 (MQ=255)                                                                                           ccATCGGCACCGGTACCTCAGGCGACACCCGACTCCTTTTCGATGTGGTGTCGGCCCAGGTAACTCGCGAGCAGTTGGCCGGACACTTCCATGACACTTAAGGACAGGCATTGGATAACGTCTATGCCATCCTGCTCGAGGGAATCAGc                                                      <  6:281858/149‑1 (MQ=255)                                                                                            cATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctga                                                     <  5:91869‑M2/149‑93 (MQ=255)                                                                                              tCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgacc                                                   >  6:91869‑M2/1‑55 (MQ=255)                                                                                                 gCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgaccttg                                                <  6:333969‑M2/149‑98 (MQ=255)                                                                                                 gCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTc                                                >  2:71723/1‑149 (MQ=255)                                                                                                            gCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCgg                                      >  1:318463/1‑148 (MQ=255)                                                                                                                gCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGcc                                 >  3:301039/1‑149 (MQ=255)                                                                                                                    cacCCGACGCCTGTTCGAGGTGGTGTCGGCCCAggtaccggtgccgatggtgtcacccagcgagacctcgtagcagcccatgtcgtgcagggcgcgggccaccggggccacctgctcggcgctgaccttgccctcgtaagggcagccaa                             >  5:333969‑M2/1‑33 (MQ=255)                                                                                                                          aCGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGt                                                    <  8:256560/120‑1 (MQ=255)                                                                                                                           ctgcTGGTCGCGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGGTGGCCGGACACTTCCATGACTCTTCCGGCCAGGCCGTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTCTTCGCCAGCTCGGTAGCCGGGCTGggcgg                      <  3:205794/146‑1 (MQ=255)                                                                                                                           cGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGggcgg                      <  1:51594/149‑1 (MQ=255)                                                                                                                                 ttCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGcc                 <  1:71723/148‑1 (MQ=255)                                                                                                                                 ttCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGcc                 <  4:301039/148‑1 (MQ=255)                                                                                                                                 ttCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTAGACATCTCGGTAGCCGGGCTGGGAGGCTGcca                >  8:153333/1‑148 (MQ=255)                                                                                                                                    gAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTc                                                                  >  6:233212/1‑96 (MQ=255)                                                                                                                                    gAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTc                                                                  <  5:233212/96‑1 (MQ=255)                                                                                                                                    gAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTc                                                <  5:270990/114‑1 (MQ=255)                                                                                                                                    gAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTc                                                >  6:270990/1‑114 (MQ=255)                                                                                                                                    gAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGCCCTTa             >  2:3512/1‑149 (MQ=255)                                                                                                                                     aGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGCCCTTAc            <  2:223698/149‑1 (MQ=255)                                                                                                                                          gtgtCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTggg                         <  5:155778/131‑1 (MQ=255)                                                                                                                                          gtgtCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTggg                         >  6:155778/1‑131 (MQ=255)                                                                                                                                            gtCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGccc                >  6:44845/1‑138 (MQ=255)                                                                                                                                            gtCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGccc                <  5:44845/138‑1 (MQ=255)                                                                                                                                                gCCCAGCTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGCCCTTACGCCAAGGGTg  >  3:23253/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                CTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTGCCCTTACGCCAAGGGTG  >  NC_002947/4012610‑4012900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.