| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4088741 | 25 (0.480) | 4 (0.080) | 4/250 | NT | 14.0% | intergenic (+155/‑193) | PP_3598/kdgD | peptidase C26/5‑dehydro‑4‑deoxyglucarate dehydratase |
| ? | NC_002947 | = 4088761 | 25 (0.500) | intergenic (+175/‑173) | PP_3598/kdgD | peptidase C26/5‑dehydro‑4‑deoxyglucarate dehydratase | |||||
CCTCTGCTTTGATCGCGGGGCGGCGCAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCTGAAAAAGGACTGGTCATCGCACAGGTTGTACGATAACTTACCTCCAACG > NC_002947/4088597‑4088889 | ccTCTGCTTTGATCGCGGGGCGGCGCAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGa < 7:150997/148‑1 (MQ=255) ctctGCTTTGATCGCGGGGCGGCGCAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGAc < 7:69938/148‑1 (MQ=255) tGATCGCGGGGCGGCGCAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTAtgt < 1:198299/148‑1 (MQ=255) cgcgGGGCGGCGCAAGGCCGCCCCCGCTTCCCGGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGttt < 3:247755/148‑1 (MQ=255) gcgGGGCGGCGCAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTgt > 5:251/1‑149 (MQ=255) gggCGGCGCAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGt > 7:240100‑M2/1‑148 (MQ=255) cgcAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGAcgacaaacacatagcagtcatcgtatc > 8:34384‑M1/1‑122 (MQ=255) ccgccCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGAcgacaaacacatagcagtcatcgtatctcttaag < 7:34384‑M1/149‑35 (MQ=255) cgccCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTgcgc < 6:251/149‑1 (MQ=255) ccccGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGTTGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATc > 5:185537/1‑148 (MQ=255) ccTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGAcgacaaacacatagcagtcatcgtatctct > 3:211618‑M1/1‑93 (MQ=255) ccTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGAcgacaaacacatagcagtcatcgtatctct < 4:211618‑M1/123‑31 (MQ=255) ctgGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCACGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACata > 4:225349/1‑149 (MQ=255) gTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGTTGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACatata < 6:185537/148‑1 (MQ=255) ccAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCa < 2:38581/149‑1 (MQ=255) tctTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCCGGTTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTAACTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACgg > 1:95137/1‑149 (MQ=255) tctTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGc > 8:189346/1‑148 (MQ=255) ttCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCAc > 1:176739/1‑149 (MQ=255) gTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGttt < 6:327100/83‑1 (MQ=255) gTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGttt > 5:327100/1‑83 (MQ=255) gTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGt > 3:129436‑M2/1‑87 (MQ=255) gTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGt < 4:129436‑M2/88‑2 (MQ=255) tCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGaa < 7:136535/149‑1 (MQ=255) cggcggGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTAACTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACaa < 2:95137/149‑1 (MQ=255) gCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCt > 8:166040/1‑149 (MQ=255) ccTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCTGaaaaa < 7:306646/148‑1 (MQ=255) tcCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCTGAAAAAGGACTgg > 3:147155/1‑149 (MQ=255) tCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATc < 4:29943/96‑1 (MQ=255) tCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATc > 3:29943/1‑96 (MQ=255) tCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATACAGACGGCCACCCTGGCGAGAACACAAAATTCTGAAAAAGGACTGGTCATCg > 5:36226/1‑148 (MQ=255) tttttCCTTTCAC‑‑TTAAGAGATAAGATGACTGCTATGTTTTTGTCGTGGTACCTGCTGCGCCTGTGAAATCGAGCGACACAACACATATATCCAGACGGCCACCCTTGCGAGAACACAAAATTCTGAAAAAGGACTGGTCATCg < 7:248975/144‑1 (MQ=255) c‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGtcgtatctcttaagggaaaggaaaaaacgatcgcggagacaggcacaagcccgccgcccgattccacgggaagagttctgggaccagcagagggtgaccggggaagcgggggcgg < 7:34384‑M2/149‑116 (MQ=255) c‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCTGAAAAAGGACTGGTCATCGCACAGGTTGTACGATaa < 2:176739/149‑1 (MQ=255) ttAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCTGAAAAAGGACTGGTCATCGCACAGGTTGTACGATAAc > 7:104848/1‑149 (MQ=255) agagATACGATGACTGCTATGTGTTTGTCGtcgtatctcttaagggaaaggaaaaaacgatcgcggagacaggcacaagcccgccgcccgattccacgggaagagttctgggaccagcagagg > 3:211618‑M2/1‑30 (MQ=255) agagATACGATGACTGCTATGTGTTTGTCGtcgtatctcttaagggaaaggaaaaaacgatcgcggagacaggcacaagcccgccgcccgattccacgggaagagttctgggaccagcagagg < 4:211618‑M2/123‑94 (MQ=255) gagaTACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCTGAAAAAGGACTGGTCATCGCACAGGTTGTACGATAACTTAc < 4:147155/149‑1 (MQ=255) gaTACGATGACTGCTATGTGTTTGTCGtcgtatctcttaagggaaaggaaaaaacgatcgcggagacaggcacaagcccgccgcccgattccacgggaagagttctgggaccagcagagggtgaccggggaagcgggggcggccttgcg > 8:34384‑M2/1‑27 (MQ=255) acgacaaacacatagcagtcatcgtatctcttaagggaaaggaaaaaacgatcgcggagacaggcacaagcccgccgcccgattccacgggaagagttctgggaccagcagagggtgaccggggaagcgggggcggccttgcgccgccc > 7:240100‑M1/1‑1 (MQ=255) acgacaaacacatagcagtcatcgtatctcttaagggaaaggaaaaaacgatcgcggagacaggcacaagcccgccgcccgattccac > 3:129436‑M1/1‑1 (MQ=255) acgacaaacacatagcagtcatcgtatctcttaagggaaaggaaaaaacgatcgcggagacaggcacaagcccgccgcccgattccac < 4:129436‑M1/88‑88 (MQ=255) | CCTCTGCTTTGATCGCGGGGCGGCGCAAGGCCGCCCCCGCTTCCCCGGTCACCCTCTGCTGGTCCCAGAACTCTTCCCGTGGAATCGGGCGGCGGGCTTGTGCCTGTCTCCGCGATCGTTTTTTCCTTTCCC‑‑TTAAGAGATACGATGACTGCTATGTGTTTGTCGTCGTACCTGCTGCGCCTGTGAAATCGAGCGCCACAACACATATATCCAGACGGCCACCCTGGCGAGAACACAAAATTCTGAAAAAGGACTGGTCATCGCACAGGTTGTACGATAACTTACCTCCAACG > NC_002947/4088597‑4088889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |