New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4150041	20 (0.390)	4 (0.090)	4/224	NT	19.0%	intergenic (+40/‑357)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	= 4150072	17 (0.380)					intergenic (+71/‑326)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein

GTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACC  >  NC_002947/4149893‑4150188                                                                                                                                                     |                                                                                                                                                     gTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC                                                                                                                                                      <  2:140733‑M1/149‑1 (MQ=255)          gCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCa                                                                                                                                               >  7:292971/1‑147 (MQ=255)             gTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGcc                                                                                                                                                   <  4:266812/140‑1 (MQ=255)             gTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGcc                                                                                                                                                   >  3:266812/1‑140 (MQ=255)                    gAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCaaa                                                                                                                                             >  6:278155/1‑139 (MQ=255)                    gAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCaaa                                                                                                                                             <  5:278155/139‑1 (MQ=255)                     aGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGc                                                                                                                                  <  8:292971/149‑1 (MQ=255)                     aGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGc                                                                                                                                  <  1:62922/149‑1 (MQ=255)                                 gTATTCCCAATGTGAAACGCTTGAGCTAGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCAGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCAGCAAACGTGACGTAGCCCGT‑CGCAGGAg                                                                                                                     <  2:310067‑M2/149‑2 (MQ=255)                                    ttCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgg                                                                                                                  >  2:81442‑M2/1‑145 (MQ=255)                                      cgcaaTGTGAAACGCTTGAGCTCGACCTTTGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTTAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcggg                                                                                                                 >  1:310067‑M2/3‑143 (MQ=255)                                      cccAATGTGACACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCtcctgcgacgggctacgtcacctttgcaggcgcggg                                                                                                                  <  5:257353‑M1/148‑37 (MQ=255)                                       ccAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtt                                                                                                               >  5:335850‑M2/1‑142 (MQ=255)                                           tgggaaaCGCGTGAGCTCGACCTTGGGGATGTCGGAAGTGATCCAGGATCGGTTGCTCCCCCTGTAGCTGTTTCCTCTTGTGCCGGCCCCTGCGCTGGTAAACCCGCtcctgcgacgggctacgtcacctttgcaggcgcgggtttacc                                                                                                            <  6:262387‑M1/146‑43 (MQ=255)                                               aaaCGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCtcctgcgacgggctacgtcacctttgcaggcgcgg                                                                                                                   <  5:191558‑M1/138‑36 (MQ=255)                                               aaaCGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCtcctgcgacgggctacgtcacctttgcaggcgcgg                                                                                                                   >  6:191558‑M1/1‑103 (MQ=255)                                                   gCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAaga                                                                                                   >  5:307663/1‑149 (MQ=255)                                                                     tgatgaAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcg                                                                                                                   <  6:5919‑M2/115‑4 (MQ=255)                                                                       atgaAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCtt                                                                                <  6:307663/148‑1 (MQ=255)                                                                                    tCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCAGCGCCTGCAAAGGTGACGTAGCCCGT‑AGCAGGAGCGGGTTTACCCGCGAAGACGCCGGCCCAGGCAACCtt                                                                                >  7:64097/1‑135 (MQ=255)                                                                                       aGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAg                                                                                                                        <  5:268091/92‑1 (MQ=255)                                                                                       aGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAg                                                                                                                        >  6:268091/1‑92 (MQ=255)                                                                                       aGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAAc                                                               >  3:256176/1‑149 (MQ=255)                                                                                               ttGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACAt                                                       <  5:142351/149‑1 (MQ=255)                                                                                                         tttAGCTTTTCCCTCTTGGGCCGGCCCCTTCGCGGTTAAACCCGCGCCTGCAAAGGTCACGTACCCCGT‑CCCAGCAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAAcc                                             <  5:23226/147‑1 (MQ=38)                                                                                                             cttttttCCTTTTGTCCCGCCCCTTTCG‑GGGTAAACCCCGGGCCGCAAAAGTTCACTACCCCCTGCGCAGCGGCGGTTTAACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGc                                         <  5:209807/145‑1 (MQ=255)                                                                                                                           tgCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCgg                           <  4:256176/149‑1 (MQ=255)                                                                                                                                         cgGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGc                                                    <  3:246958/110‑1 (MQ=255)                                                                                                                                         cgGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGc                                                    >  4:246958/1‑110 (MQ=255)                                                                                                                                           ggTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttaccagcgcaggggccggcacaagaggaaacagctacagggggagcaaccgatcctggatcacttccgacatccccaaggtcgagctcacgcgtttccca           <  6:262387‑M2/149‑108 (MQ=255)                                                                                                                                           ggTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCCCCGTGATCCGGTTGCCCCCCCcgccgc           >  6:280420/1‑149 (MQ=255)                                                                                                                                             tAAACCCGCGCCTGCAACGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACACCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGccc         <  7:199119/149‑1 (MQ=255)                                                                                                                                               aaCCCGCtcctgcgacgggctacgtcacctttgcaggcgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgg        >  5:335850‑M1/1‑7 (MQ=255)                                                                                                                                                aCCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCACGCCGCCCctc      >  6:289299/1‑149 (MQ=255)                                                                                                                                                 cccGCtcctgcgacgggctacgtcacctttgcaggcgcgggttaacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcacaaaggtcgagctcaagcgtttcacattgcg       >  1:310067‑M1/1‑5 (MQ=255)                                                                                                                                                 cccGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtgtcacattggg      <  5:257353‑M2/148‑113 (MQ=255)                                                                                                                                                  ccGCtcctgcgacgggctacgtcacctttgcaggcgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtttcacattgggaa     >  2:81442‑M1/1‑4 (MQ=255)                                                                                                                                                  ccGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgttt               >  6:191558‑M2/1‑35 (MQ=255)                                                                                                                                                  ccGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgttt               <  5:191558‑M2/138‑104 (MQ=255)                                                                                                                                                   cGCtcctgcgacgggctacgtcacctttgcaggcgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatca                                      <  6:5919‑M1/115‑113 (MQ=255)                                                                                                                                                     ctcctgcgacgggctacgtcacgtttgctggcgcgggtttacccgcgaaggggccggcacaagaggaaactgctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtctagctcaagcgtttcacattgggaatac  <  2:310067‑M1/149‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACC  >  NC_002947/4149893‑4150188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.