New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4150041	20 (0.390)	4 (0.090)	4/224	NT	19.0%	intergenic (+40/‑357)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	= 4150072	17 (0.380)					intergenic (+71/‑326)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein

GTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTGGCACTCTCCTT  >  NC_002947/4149925‑4150219                                                                                                                                                     |                                                                                                                                                    gTATTCCCAATGTGAAACGCTTGAGCTAGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCAGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCAGCAAACGTGACGTAGCCCGT‑CGCAGGAg                                                                                                                                                    <  2:310067‑M2/149‑2 (MQ=255)    ttCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgg                                                                                                                                                 >  2:81442‑M2/1‑145 (MQ=255)      cgcaaTGTGAAACGCTTGAGCTCGACCTTTGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTTAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcggg                                                                                                                                                >  1:310067‑M2/3‑143 (MQ=255)       ccAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtt                                                                                                                                              >  5:335850‑M2/1‑142 (MQ=255)                   gCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAaga                                                                                                                                  >  5:307663/1‑149 (MQ=255)                                     tgatgaAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcg                                                                                                                                                  <  6:5919‑M2/115‑4 (MQ=255)                                       atgaAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCtt                                                                                                               <  6:307663/148‑1 (MQ=255)                                                    tCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCAGCGCCTGCAAAGGTGACGTAGCCCGT‑AGCAGGAGCGGGTTTACCCGCGAAGACGCCGGCCCAGGCAACCtt                                                                                                               >  7:64097/1‑135 (MQ=255)                                                       aGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAAc                                                                                              >  3:256176/1‑149 (MQ=255)                                                               ttGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACAt                                                                                      <  5:142351/149‑1 (MQ=255)                                                                         tttAGCTTTTCCCTCTTGGGCCGGCCCCTTCGCGGTTAAACCCGCGCCTGCAAAGGTCACGTACCCCGT‑CCCAGCAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAAcc                                                                            <  5:23226/147‑1 (MQ=38)                                                                             cttttttCCTTTTGTCCCGCCCCTTTCG‑GGGTAAACCCCGGGCCGCAAAAGTTCACTACCCCCTGCGCAGCGGCGGTTTAACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGc                                                                        <  5:209807/145‑1 (MQ=255)                                                                                           tgCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCgg                                                          <  4:256176/149‑1 (MQ=255)                                                                                                         cgGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGc                                                                                   >  4:246958/1‑110 (MQ=255)                                                                                                         cgGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGc                                                                                   <  3:246958/110‑1 (MQ=255)                                                                                                           ggTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttaccagcgcaggggccggcacaagaggaaacagctacagggggagcaaccgatcctggatcacttccgacatccccaaggtcgagctcacgcgtttccca                                          <  6:262387‑M2/149‑108 (MQ=255)                                                                                                           ggTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCCCCGTGATCCGGTTGCCCCCCCcgccgc                                          >  6:280420/1‑149 (MQ=255)                                                                                                             tAAACCCGCGCCTGCAACGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACACCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGccc                                        <  7:199119/149‑1 (MQ=255)                                                                                                                aCCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCACGCCGCCCctc                                     >  6:289299/1‑149 (MQ=255)                                                                                                                 cccGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgtgtcacattggg                                     <  5:257353‑M2/148‑113 (MQ=255)                                                                                                                  ccGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgttt                                              <  5:191558‑M2/138‑104 (MQ=255)                                                                                                                  ccGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAgcgggtttacccgcgaaggggccggcacaagaggaaacagctacatggggagcaaccgatcctggatcacttccttcatcaccaaggtcgagctcaagcgttt                                              >  6:191558‑M2/1‑35 (MQ=255)                                                                                                                        cTGCAAAGGGCACGTAGCCCGC‑GGCAGCAGCGGGTTAACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCaa                             <  5:777/149‑1 (MQ=255)                                                                                                                                  gACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTcagc                   >  7:248567/1‑149 (MQ=255)                                                                                                                                        gCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCTACCCAGCCCACCGTGATCCGGTTGCCACCCCCTCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTg             <  5:289299/149‑1 (MQ=255)                                                                                                                                        gCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGt                                                         <  1:239906/105‑1 (MQ=255)                                                                                                                                        gCCCGT‑CGCAGCAGCCGGTTTACCCGCGAAGAGGCCGTCCCAGGCAACCTTACATCTGCCCTGAAAACGCGCACATCGCACCAACACAGCCAAACGTGATCAGGt                                                         >  2:239906/1‑105 (MQ=37)                                                                                                                                                    gAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAg                            >  8:175358/1‑123 (MQ=255)                                                                                                                                                    gAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAg                            <  7:175358/123‑1 (MQ=255)                                                                                                                                                    gAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCCGCTGGCACTCTCCtt  >  5:58137/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCAAAGGTGACGTAGCCCGT‑CGCAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACCTTTCATCTGCCCTGAAAACGCGCACATCGCACCAACCCAGCCCACCGTGATCCGGTTGCCACCCCCGCCGCCCCTCTACCCCAAGGCCTTCAGCCAGCTGGCACTCTCCTT  >  NC_002947/4149925‑4150219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.