New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4438181	30 (0.580)	4 (0.080)	4/242	NT	10.8%	coding (1341/1425 nt)	PP_3932	diguanylate cyclase
	?	NC_002947	= 4438272	38 (0.790)					coding (757/762 nt)	PP_3933	membrane protein

CACCGCCGAACGCCTGCGCCGCGCCATACAGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAG  >  NC_002947/4438043‑4438329                                                                                                                                           |                                                                                                                                                     cACCGCCGAACGCCTGCGCCGCGCCATACAGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGTCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGAc                                                                                                                                             <  3:239074/148‑1 (MQ=255)      ccgAACGCCTGCGCCGCGCCATACAGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGgcg                                                                                                                                       <  5:316164/149‑1 (MQ=255)                   ccgcgccATACAGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCggctagttcagatcaccaggcgctgtgc                                                                                                                          >  8:209487‑M1/1‑121 (MQ=255)                         cATACAGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGccc                                                                                                                    <  8:115338/149‑1 (MQ=255)                             cAGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGTGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCggg                                                                                                                 <  1:282244/148‑1 (MQ=255)                              aGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGc                                                                                                               >  2:43846/1‑149 (MQ=255)                                   cTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGTCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCaa                                                                                                          >  5:229810/1‑149 (MQ=255)                                              acaGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGaa                                                                                                >  6:240308/1‑148 (MQ=255)                                                  gCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGc                                                                                           >  7:246279/1‑149 (MQ=255)                                                       cctgcgcATGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCATACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGaa                                                                                       <  6:229810/145‑1 (MQ=255)                                                         aGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCggctagttcagatcaccaggcgctgtgcttcggcctgttcgacgcggttgcggccccgggccttgg                                                                                    >  4:282683‑M1/1‑83 (MQ=255)                                                          gcgcCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGcac                                                                                   <  6:221257/149‑1 (MQ=255)                                                                  aGATTACCGTGAGTAGCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACGGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTg                                                                           <  1:45661/149‑1 (MQ=255)                                                                    aTTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGAGGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGt                                                                         <  8:246279/149‑1 (MQ=255)                                                                           tGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTg                                                                   >  2:141544/1‑148 (MQ=255)                                                                                   ggTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCg                                                          >  7:64815‑M2/1‑148 (MQ=255)                                                                                     tgtgGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggc                                                        >  5:240308‑M2/1‑146 (MQ=255)                                                                                         gCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCggctagttcagatcaccaggcgctgtgcttcggcctgttcgacgcggttgcggccccgggccttggcccggtacagcgcctggtcggcactggccag                                                     <  3:282683‑M1/148‑98 (MQ=255)                                                                                         gCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccag                                                     <  4:139428‑M2/148‑7 (MQ=255)                                                                                           aGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCggctagttcagatcaccaggcgctgtgcttcggcctgttcgacgcggttgcggccccgggccttggcccggtacagcgcctggtcggcactggccagcag                                                  <  7:209487‑M1/149‑101 (MQ=255)                                                                                             gCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGt                                                <  1:141544/149‑1 (MQ=255)                                                                                                   aCGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCAc                                           <  8:307127/148‑1 (MQ=255)                                                                                                     gCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGa                                         >  3:58580/1‑148 (MQ=255)                                                                                                     gCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGa                                         >  2:299527/1‑148 (MQ=255)                                                                                                        gACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACCGGCCGCAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGc                                     >  8:205870/1‑149 (MQ=255)                                                                                                              ccGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAATTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCg                               <  1:43846/149‑1 (MQ=255)                                                                                                                  cccccAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCa                           <  1:299527/149‑1 (MQ=255)                                                                                                                     gccggcTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGca                        <  3:233621/144‑1 (MQ=255)                                                                                                                     ccAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGAt                                                                      <  1:217695/103‑1 (MQ=255)                                                                                                                     ccAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGAt                                                                      >  2:217695/1‑103 (MQ=255)                                                                                                                          cTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGcacacac                   <  7:235750/149‑1 (MQ=255)                                                                                                                          cTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGcacaca                    >  8:235750/1‑148 (MQ=255)                                                                                                                           tCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCg                               <  3:220893/136‑1 (MQ=255)                                                                                                                           tCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCg                               >  4:220893/1‑136 (MQ=255)                                                                                                                                   ctgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcct          <  7:209487‑M2/149‑50 (MQ=255)                                                                                                                                   ctgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCAcc          <  4:58580/149‑1 (MQ=255)                                                                                                                                    tgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACacaac                >  8:135880/1‑142 (MQ=255)                                                                                                                                    tgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACacaac                <  7:135880/142‑1 (MQ=255)                                                                                                                                      ctgGCCggctagttcagatcaccaggcgctgtgcttcggcctgttcgacgcggttgcggccccgggccttggcccggtacagcgcctggtcggcactggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgc        <  4:139428‑M1/148‑143 (MQ=255)                                                                                                                                      ctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgc        <  3:282683‑M2/148‑52 (MQ=255)                                                                                                                                         gCCggctagttcagatcaccaggcgctgtgcttcggcctgttcgacgcggttgcggccccgggccttggcccggtacagcgcctggtcggcactggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgccaca    >  5:240308‑M1/1‑3 (MQ=255)                                                                                                                                           cggctagttcagatcaccaggcgctgtgcttcggcctgttcgacgcggttgcggccccgggccttggcccggtacagcgcctggtcggcactggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgccacacc  >  7:64815‑M1/1‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                     CACCGCCGAACGCCTGCGCCGCGCCATACAGGACCTGCACGTGACACAGGCCGACCAGCGCCTGCAGATTACCGTGAGTATCGGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAG  >  NC_002947/4438043‑4438329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.