New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4438181	30 (0.580)	4 (0.080)	4/242	NT	10.8%	coding (1341/1425 nt)	PP_3932	diguanylate cyclase
	?	NC_002947	= 4438272	38 (0.790)					coding (757/762 nt)	PP_3933	membrane protein

GGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGCT  >  NC_002947/4438125‑4438417                                                                                                                                                    |                                                                                                                                                  ggTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCg                                                                                                                                                  >  7:64815‑M2/1‑148 (MQ=255)   tgtgGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggc                                                                                                                                                >  5:240308‑M2/1‑146 (MQ=255)       gCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccag                                                                                                                                             <  4:139428‑M2/148‑7 (MQ=255)           gCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGt                                                                                                                                        <  1:141544/149‑1 (MQ=255)                 aCGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCAc                                                                                                                                   <  8:307127/148‑1 (MQ=255)                   gCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGa                                                                                                                                 >  3:58580/1‑148 (MQ=255)                   gCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGa                                                                                                                                 >  2:299527/1‑148 (MQ=255)                      gACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACCGGCCGCAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGc                                                                                                                             >  8:205870/1‑149 (MQ=255)                            ccGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAATTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCg                                                                                                                       <  1:43846/149‑1 (MQ=255)                                cccccAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCa                                                                                                                   <  1:299527/149‑1 (MQ=255)                                   gccggcTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGca                                                                                                                <  3:233621/144‑1 (MQ=255)                                        cTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGcacacac                                                                                                           <  7:235750/149‑1 (MQ=255)                                        cTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGcacaca                                                                                                            >  8:235750/1‑148 (MQ=255)                                         tCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCg                                                                                                                       <  3:220893/136‑1 (MQ=255)                                         tCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCg                                                                                                                       >  4:220893/1‑136 (MQ=255)                                                 ctgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcct                                                                                                  <  7:209487‑M2/149‑50 (MQ=255)                                                 ctgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCAcc                                                                                                  <  4:58580/149‑1 (MQ=255)                                                  tgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACacaac                                                                                                        >  8:135880/1‑142 (MQ=255)                                                  tgctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACacaac                                                                                                        <  7:135880/142‑1 (MQ=255)                                                    ctgGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgc                                                                                                <  3:282683‑M2/148‑52 (MQ=255)                                                                gACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCCCGACAGCTTGGCGATCAGcac                                                                                                               >  5:113572/1‑121 (MQ=255)                                                                gACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGcac                                                                                                               <  6:113572/121‑1 (MQ=255)                                                                gACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGC‑TGGCGATCAGCACCCACAACAGCACCAGGAACAGCCCGCGGa                                                                                  >  8:132127/1‑149 (MQ=255)                                                                 aCCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGa                                                                                  >  1:306919/1‑149 (MQ=255)                                                                     ggCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAg                                                                                                >  3:290390/1‑131 (MQ=255)                                                                     ggCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAg                                                                                                <  4:290390/131‑1 (MQ=255)                                                                              ccGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCAcc                                                                     >  1:125433/1‑149 (MQ=255)                                                                                   ccAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgccacaccgatactcacggtaatctgcaggcgct                                                                >  4:282683‑M2/1‑66 (MQ=255)                                                                                   ccAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGc                                                                <  3:139428/149‑1 (MQ=255)                                                                                    cAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCg                                                               >  7:165756/1‑149 (MQ=255)                                                                                     aaGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGc                                                                                                                        <  7:276297/91‑1 (MQ=255)                                                                                     aaGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGc                                                                                                                        >  8:276297/1‑91 (MQ=255)                                                                                     aaGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGc                                                                                                                        <  1:135619/91‑1 (MQ=255)                                                                                     aaGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGc                                                                                                                        >  2:135619/1‑91 (MQ=255)                                                                                        gCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACCCAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTAcc                                                           >  8:98565/1‑149 (MQ=255)                                                                                              ggCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCgccagc                                                     <  2:125433/149‑1 (MQ=255)                                                                                                  gCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAgg                                                 >  4:265573/1‑149 (MQ=255)                                                                                                             gAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAgc                                      >  7:114843/1‑149 (MQ=255)                                                                                                              aaCAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAgcg                                     >  1:87604/1‑149 (MQ=255)                                                                                                                         gCACAGCGCCTGGTGATCTGAACTAGCCggccagcagttcgtcgaggctgggggccggcatgtctgcgtcgcagcctgccacaccgatactcacggtaatctgcaggcgctggtcggcctgtgtcacgtgcaggtcctgtatggcgcgg                          >  8:209487‑M2/1‑28 (MQ=255)                                                                                                                           acaGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATgat                        >  7:208238/1‑147 (MQ=255)                                                                                                                              gcgcCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGca                     <  2:306919/149‑1 (MQ=255)                                                                                                                              gcgcCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGATGca                     <  8:208238/149‑1 (MQ=255)                                                                                                                                   tGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTg                >  7:105924/1‑149 (MQ=255)                                                                                                                                        aTCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCAt            <  8:165756/148‑1 (MQ=255)                                                                                                                                         tCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATgg          >  2:175654/1‑149 (MQ=255)                                                                                                                                                  gCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGc   <  2:87604/147‑1 (MQ=255)                                                                                                                                                  gCCGGCCAGCAGGTCCCACGACAGC‑TGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGCt  <  7:132127/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGTGTGGCAGGCTGCGACGCAGACATGCCGGCCCCCAGCCTCGACGAACTGCTGGCCAGTGCCGACCAGGCGCTGTACCGGGCCAAGGCCCGGGGCCGCAACCGCGTCGAACAGGCCGAAGCACAGCGCCTGGTGATCTGAACTAGCCGGCCAGCAGGTCCCACGACAGCTTGGCGATCAGCACACACAACAGCACCAGGAACAGCCCGCGGACAAACCCGGCACCCTTGCGTACCGCCAGCCAGGTACCGGTCAGCGCGCCGAGAATGTTGCACACTGCCATGGGCAAGGCT  >  NC_002947/4438125‑4438417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.