New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4474244 =	41 (0.790)	4 (0.080)	4/248	NT	9.5%	coding (1292/1536 nt)	PP_3964	transposase
	?	NC_002947	4474296 =	37 (0.750)					coding (1240/1536 nt)	PP_3964	transposase

ATCATGCCCATTCATGCGCGCCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGC  >  NC_002947/4474096‑4474386                                                                                                                                                     |                                                                                                                                                aTCATGCCCATTCATGCGCGCCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGca                                                                                                                                                 <  6:11032/149‑1 (MQ=255)   cATGCCCATTCATGCGCGCCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTTCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGcaca                                                                                                                                               <  7:291720/149‑1 (MQ=255)   cATGCCCATTCATGCGCGCCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGca                                                                                                                                                 >  4:285201/1‑147 (MQ=255)     gtcaggcgcgggagatgagtgatgaagagcgctggcgaatacgacaagaattggcggtgccgatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACA‑Gc                                                                                                                                            >  5:105161‑M1/145‑149 (MQ=255)              aTGCGCGCCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCatcatc                                                                                                                                   >  2:306701/1‑149 (MQ=255)                 cgcgcCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCa                                                                                                                                 <  1:218512/148‑1 (MQ=255)                 cgcgcCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCa                                                                                                                                 <  6:230998/148‑1 (MQ=255)                 cgcgcCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAg                                                                                                                                <  6:78187/149‑1 (MQ=255)                       gtgatgaagagcgctggcgaatacgacaagaattggcggtgccgatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACA‑GCCCCATCATCCAGGTAgcg                                                                                                                          <  8:100847‑M1/23‑1 (MQ=255)                              tCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAgc                                                                                                                   >  8:82598/1‑149 (MQ=255)                                 aaCTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAgcgc                                                                                                                 >  1:18093/1‑148 (MQ=255)                                    tCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTAcc                                                                                                             >  1:88546/1‑149 (MQ=255)                                              cGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCa                                                                                                           >  4:184434/1‑141 (MQ=255)                                              cGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCa                                                                                                           <  3:184434/141‑1 (MQ=255)                                                    ccGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTg                                                                                              >  5:77586/1‑148 (MQ=255)                                                    ccGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGAAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTg                                                                                              >  5:50138/1‑148 (MQ=255)                                                     cGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGATGAGGCCCCAACATCCAGGTAGCGCGGAAGCGCTACCCACCGTTTAAGGCGGt                                                                                             >  1:270841/1‑149 (MQ=17)                                                      gCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAgg                                                                                                 <  6:2538/143‑1 (MQ=255)                                                      gCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAgg                                                                                                 >  5:2538/1‑143 (MQ=255)                                                      gCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTaa                                                                                           >  1:24267/1‑149 (MQ=255)                                                           cggtgccgatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAg                                                                                      >  7:100847‑M1/91‑149 (MQ=255)                                                           ccGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAg                                                                                      <  4:76671/149‑1 (MQ=255)                                                                  gcAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                       >  6:184792/1‑141 (MQ=255)                                                                  gcAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                       <  5:184792/141‑1 (MQ=255)                                                                  gcAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTg                                                                               <  2:18093/149‑1 (MQ=255)                                                                  gatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAAt                                                                                          <  6:84557‑M1/55‑1 (MQ=255)                                                                  gatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAAt                                                                                          >  5:84557‑M1/84‑138 (MQ=255)                                                                        aTCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTg                                                                         >  2:276238/1‑149 (MQ=255)                                                                           ccGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCt                                                                      <  7:82598/149‑1 (MQ=255)                                                                              cAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGAt                                                                   <  3:285201/149‑1 (MQ=255)                                                                                  tAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCAt                                                               >  4:88960/1‑149 (MQ=255)                                                                                     ccAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTgg                                                            <  3:88960/149‑1 (MQ=255)                                                                                      cAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                       <  3:260411/121‑1 (MQ=38)                                                                                      cAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                       >  4:260411/1‑121 (MQ=38)                                                                                        gTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCa                                                         >  5:53315/1‑149 (MQ=255)                                                                                          gatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACA‑Gc                                                                                                                                            <  3:119485‑M1/5‑1 (MQ=255)                                                                                          gatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACA‑Gc                                                                                                                                            >  4:119485‑M1/60‑64 (MQ=255)                                                                                                   cGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGc                                              <  6:77586/149‑1 (MQ=255)                                                                                                    gAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCt                                             <  1:306701/149‑1 (MQ=255)                                                                                                    gAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCt                                             <  4:271403/149‑1 (MQ=255)                                                                                                           cATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGACGTGGCTGATCCATTGGGCACCAGGTCTCGCTGATCCa                                       >  3:91154/1‑148 (MQ=255)                                                                                                            aTGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAAc                                     <  2:88546/149‑1 (MQ=255)                                                                                                                 cGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATc                                  >  2:289352/1‑147 (MQ=255)                                                                                                                    aTCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCAATACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGt                              >  1:263001/1‑148 (MQ=255)                                                                                                                     tCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTc                             <  1:276238/148‑1 (MQ=255)                                                                                                                         gTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCAt                           <  2:270841/146‑1 (MQ=255)                                                                                                                                  cTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGa               <  2:24267/149‑1 (MQ=255)                                                                                                                                   tGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAg              >  2:188055/1‑149 (MQ=255)                                                                                                                                   tGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAg              >  8:46042/1‑149 (MQ=255)                                                                                                                                         ttgtCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGAGCgg        <  6:294701/149‑1 (MQ=255)                                                                                                                                               attgtcaca‑CCCCCATCATCCCTGTAGCGCGTCAGCGCTACCAAGCGTTGCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCCTTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCg         <  8:288001/137‑1 (MQ=14)                                                                                                                                               aTGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCCGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCGGAGCCAACATCCAGTCATGCAGGTTTTTGAGGATCGGcgatcg  >  7:288001/1‑144 (MQ=255)                                                                                                                                                     |                                                                                                                                                ATCATGCCCATTCATGCGCGCCGACTGGATCAAACTCATGATTGCCGCAGCCCGCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACA‑GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGC  >  NC_002947/4474096‑4474386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.