New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4474244 =	41 (0.790)	4 (0.080)	4/248	NT	9.5%	coding (1292/1536 nt)	PP_3964	transposase
	?	NC_002947	4474296 =	37 (0.750)					coding (1240/1536 nt)	PP_3964	transposase

GCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTCATGTCCCGCGCCTGAC  >  NC_002947/4474149‑4474439                                                                                                                                                    |                                                                                                                                                gCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTaa                                                                                                                                                >  1:24267/1‑149 (MQ=255)      cggtgccgatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAg                                                                                                                                           >  7:100847‑M1/91‑149 (MQ=255)      ccGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAg                                                                                                                                           <  4:76671/149‑1 (MQ=255)             gcAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                                                                            >  6:184792/1‑141 (MQ=255)             gcAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                                                                            <  5:184792/141‑1 (MQ=255)             gcAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTg                                                                                                                                    <  2:18093/149‑1 (MQ=255)             gatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAAt                                                                                                                                               <  6:84557‑M1/55‑1 (MQ=255)             gatcctcaaaaaactgcatgactggatgttggctcagcgagacctggtgcccaatggatcagccacggccaaagccctcgattACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAAt                                                                                                                                               >  5:84557‑M1/84‑138 (MQ=255)                   aTCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTg                                                                                                                              >  2:276238/1‑149 (MQ=255)                      ccGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCt                                                                                                                           <  7:82598/149‑1 (MQ=255)                         cAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGAt                                                                                                                        <  3:285201/149‑1 (MQ=255)                             tAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCAt                                                                                                                    >  4:88960/1‑149 (MQ=255)                                ccAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTgg                                                                                                                 <  3:88960/149‑1 (MQ=255)                                 cAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                                                                            <  3:260411/121‑1 (MQ=38)                                 cAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGa                                                                                                                                            >  4:260411/1‑121 (MQ=38)                                   gTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCa                                                                                                              >  5:53315/1‑149 (MQ=255)                                              cGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGc                                                                                                   <  6:77586/149‑1 (MQ=255)                                               gAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCt                                                                                                  <  1:306701/149‑1 (MQ=255)                                               gAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCt                                                                                                  <  4:271403/149‑1 (MQ=255)                                                      cATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGACGTGGCTGATCCATTGGGCACCAGGTCTCGCTGATCCa                                                                                            >  3:91154/1‑148 (MQ=255)                                                       aTGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAAc                                                                                          <  2:88546/149‑1 (MQ=255)                                                            cGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATc                                                                                       >  2:289352/1‑147 (MQ=255)                                                               aTCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCAATACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGt                                                                                   >  1:263001/1‑148 (MQ=255)                                                                tCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTc                                                                                  <  1:276238/148‑1 (MQ=255)                                                                    gTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCAt                                                                                <  2:270841/146‑1 (MQ=255)                                                                             cTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGa                                                                    <  2:24267/149‑1 (MQ=255)                                                                              tGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAg                                                                   >  2:188055/1‑149 (MQ=255)                                                                              tGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAg                                                                   >  8:46042/1‑149 (MQ=255)                                                                                    ttgtCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGAGCgg                                                             <  6:294701/149‑1 (MQ=255)                                                                                         ctcgattacagcctgaaacgctgggtagcgctgacgcgctacctggatgatggggctgtAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCg                                                        >  7:100847‑M2/60‑149 (MQ=255)                                                                                          attgtcacaCCCCCATCATCCCTGTAGCGCGTCAGCGCTACCAAGCGTTGCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCCTTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCg                                                              <  8:288001/137‑1 (MQ=14)                                                                                          aTGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCCGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCGGAGCCAACATCCAGTCATGCAGGTTTTTGAGGATCGGcgatcg                                                       >  7:288001/1‑144 (MQ=255)                                                                                             attacagcctgaaacgctgggtagcgctgacgcgctacctggatgatggggctgtAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATc                                                               >  5:84557‑M2/56‑138 (MQ=255)                                                                                             attacagcctgaaacgctgggtagcgctgacgcgctacctggatgatggggctgtAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATc                                                               <  6:84557‑M2/83‑1 (MQ=255)                                                                                                   GCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTg                                              >  1:289352‑M1/1‑149 (MQ=255)                                                                                                     CCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTc                                            >  7:46042‑M1/1‑149 (MQ=255)                                                                                                     CCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTATTGAGGATCGGCACCGCCAATTCTTGTc                                            >  1:188055‑M1/1‑149 (MQ=255)                                                                                                      ccATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGa                                                                                                >  4:77542/1‑96 (MQ=255)                                                                                                      ccATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGa                                                                                                <  3:77542/96‑1 (MQ=255)                                                                                                            tcCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCg                                     >  8:65799/1‑149 (MQ=255)                                                                                                                 gTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCgg                                                             <  7:178061/120‑1 (MQ=255)                                                                                                                 gTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCgg                                                             >  8:178061/1‑120 (MQ=255)                                                                                                                      gcgTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGctct                           <  6:53315/149‑1 (MQ=255)                                                                                                                         gcAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTtca                        <  6:50138/148‑1 (MQ=255)                                                                                                                             cgctacctggatgatggggctgtAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCAc                    <  8:100847‑M2/126‑1 (MQ=255)                                                                                                                               cTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTc                  <  7:65799/149‑1 (MQ=255)                                                                                                                                tACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCAGGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTCa                 >  8:142365/1‑149 (MQ=255)                                                                                                                                       cGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTCATGTCCcg          >  1:280586/1‑149 (MQ=255)                                                                                                                                             aGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTtc                         >  6:171182/1‑128 (MQ=255)                                                                                                                                             aGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTtc                         <  5:171182/128‑1 (MQ=255)                                                                                                                                             aGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTCATGTCCCGCGCCt     >  8:73308/1‑148 (MQ=255)                                                                                                                                             aGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTCATGTCCCGCGCCt     <  2:263001/148‑1 (MQ=255)                                                                                                                                               gctgtAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATc                                                                                       >  4:119485‑M2/6‑64 (MQ=255)                                                                                                                                               gctgtAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATc                                                                                       <  3:119485‑M2/59‑1 (MQ=255)                                                                                                                                               gctgtAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTCATCTCCCGCGCCTGAc  >  5:105161‑M2/6‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                GCTTACCGCTGCGCAGGGATCCCGCAAATAACCAGTTCGAGCGCCCGAGTGCCCATGGCCGTATCTGGTTTTCGACCTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATCGGCACCGCCAATTCTTGTCGTATTCGCCAGCGCTCTTCATCACTCATGTCCCGCGCCTGAC  >  NC_002947/4474149‑4474439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.