New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4712124 =	51 (0.990)	4 (0.080)	4/248	NT	8.1%	coding (356/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	4712160 =	42 (0.850)					coding (392/2115 nt)	PP_4171	hypothetical protein

TCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCC  >  NC_002947/4711977‑4712270                                                                                                                                                    |                                                                                                                                                   tCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTg                                                                                                                                                   <  6:73895/149‑1 (MQ=255)   cccGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGc                                                                                                                                                 >  3:113391/1‑149 (MQ=255)    ccGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGc                                                                                                                                                 >  7:225132/1‑148 (MQ=255)     ctggccgcgtgtcactttcagccgcgtaccatggctgtcggcgggtttgcgggtgaggatgttgaccaccgccatcagcgcgttggcgccatagctgacggtattcgggccacgaaacacctcgatgcgctcgatatcctccaTGGcc                                                                                                                                                <  5:43318‑M1/5‑1 (MQ=255)        aCTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACgg                                                                                                                                            <  4:113391/149‑1 (MQ=255)               cgcCTGGTACCGGGCATGATGAGCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTg                                                                                                                                     <  4:144662/149‑1 (MQ=255)                  actttcagccgcgtaccatggctgtcggcgggtttgcgggtgaggatgttgaccaccgccatcagcgcgttggcgccatagctgacggtattcgggccacgaaacacctcgatgcgctcgatatcctccaTg                                                                                                                                                   >  6:29712‑M1/131‑132 (MQ=255)                  actttcagccgcgtaccatggctgtcggcgggtttgcgggtgaggatgttgaccaccgccatcagcgcgttggcgccatagctgacggtattcgggccacgaaacacctcgatgcgctcgatatcctccaTGGCCACGGTGGACTGGAg                                                                                                                                  <  7:182822‑M1/19‑1 (MQ=255)                   tGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGc                                                                                                                                 >  3:125154/1‑149 (MQ=255)                     gTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGc                                                                                                                                 <  5:214732/147‑1 (MQ=255)                       aCCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACa                                                                                                                             >  7:29134/1‑149 (MQ=255)                        ccGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACAt                                                                                                                            >  8:249838/1‑149 (MQ=255)                         cGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATc                                                                                                                           >  3:178998/1‑149 (MQ=255)                          gggCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATcc                                                                                                                          >  7:185841/1‑149 (MQ=255)                                   gatCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGa                                                                                                                                   >  6:145298/1‑131 (MQ=255)                                       ggCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATgga                                                                                                             <  5:321189/149‑1 (MQ=255)                                       ctggcggcgggtttgcgggtgaggctcttgaccaccgccatgagcgcgttggcgccatagctgacggtattccggccacgaaacacctcgatgcgctcgatatcctccaTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATgga                                                                                                             >  3:242823‑M1/110‑149 (MQ=255)                                         cTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATggagg                                                                                                           <  1:114651/149‑1 (MQ=255)                                         cTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATggagg                                                                                                           <  1:108499/149‑1 (MQ=255)                                          tcggcgggtttgcgggtgaggatgttgaccaccgccatcagcgcgttggcgccatagctgacggtattcgggccacgaaacacctcgatgcgctcgatatcctccaTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATggagg                                                                                                           >  2:306908‑M1/107‑148 (MQ=255)                                                gCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGCCTGGAGCGACATCCCCTTGGCCATGGAGGATATc                                                                                                      >  8:101619/1‑147 (MQ=255)                                                 gtttgcgggtgaggatgttgaccaccgccatcagcgcgttggcgccatagctgacggtattcgggccacgaaacacctcgatgcgctcgatatcctccaTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAg                                                                                                   >  8:182822‑M1/100‑149 (MQ=255)                                                 ccGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGa                                                                                                    <  8:185841/148‑1 (MQ=255)                                                 ccGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGa                                                                                                    <  1:318969/148‑1 (MQ=255)                                                 ccGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAg                                                                                                   >  7:77772/1‑149 (MQ=255)                                                  cGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTg                                                                                                                     <  6:130453/130‑1 (MQ=255)                                                         cAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATc                                                                                             >  1:42994/1‑147 (MQ=255)                                                          aaCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTg                                                                                                                                     <  2:92293/106‑1 (MQ=255)                                                          aaCCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTg                                                                                                                                     >  1:92293/1‑106 (MQ=255)                                                            cccACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGgt                                                                                        <  4:285193/149‑1 (MQ=255)                                                             ccACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGa                                                                                                                               <  1:250541/109‑1 (MQ=255)                                                             ccACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGa                                                                                                                               >  2:250541/1‑109 (MQ=255)                                                                cGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGttt                                                                                    <  4:178998/149‑1 (MQ=255)                                                                       cTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGc                                                                                                                                 <  7:169988/97‑1 (MQ=255)                                                                       cTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGc                                                                                                                                 >  8:169988/1‑97 (MQ=255)                                                                       cTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAg                                                                                                   >  2:284651/1‑127 (MQ=255)                                                                          ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGgt                                                                                        <  2:284436/135‑1 (MQ=255)                                                                          ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGgt                                                                                        >  1:284436/1‑135 (MQ=255)                                                                          ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCg                                                                           >  1:85355/1‑148 (MQ=255)                                                                          ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCg                                                                           <  8:29134/148‑1 (MQ=255)                                                                          ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCATTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGccc                                                                            <  8:225132/147‑1 (MQ=255)                                                                               gcagcaACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATAcc                                                                     >  2:75025/1‑149 (MQ=255)                                                                               gcagcaACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATAcc                                                                     <  7:249838/149‑1 (MQ=255)                                                                                       gTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGc                                                                                                                                 <  1:318024/81‑1 (MQ=255)                                                                                       gTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGc                                                                                                                                 >  2:318024/1‑81 (MQ=255)                                                                                       gTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTa                                                             >  7:286014/1‑149 (MQ=255)                                                                                         cAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATg                                                           >  5:293711/1‑149 (MQ=255)                                                                                                     gcgcATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACgcgc                                               >  2:321230/1‑149 (MQ=255)                                                                                                         aTGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGgcgc                                                       <  6:132365/137‑1 (MQ=255)                                                                                                         aTGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGgcgc                                                       >  5:132365/1‑137 (MQ=255)                                                                                                                  ttGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCggtggt                                  >  6:313830/1‑149 (MQ=255)                                                                                                                    gATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCggtgg                                   <  6:168946/146‑1 (MQ=255)                                                                                                                    gATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCggtgg                                   >  5:168946/1‑146 (MQ=255)                                                                                                                     aTCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCa                                <  5:313830/148‑1 (MQ=255)                                                                                                                            cctgcgcGGTATACCGAGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCggt                                     <  6:318760/130‑1 (MQ=255)                                                                                                                             ccGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCa                       >  2:34522/1‑149 (MQ=255)                                                                                                                                 tCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCg                   >  6:43318/1‑149 (MQ=255)                                                                                                                                       taCCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAAcc             <  5:92686/149‑1 (MQ=255)                                                                                                                                           gcgcAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACccgcc         <  1:34522/149‑1 (MQ=255)                                                                                                                                             gcAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGa       <  2:42994/149‑1 (MQ=255)                                                                                                                                               aGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACa     <  8:286014/149‑1 (MQ=255)                                                                                                                                                 gCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGc   <  1:75025/149‑1 (MQ=255)                                                                                                                                                  ccTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGcc  <  6:293711/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCC  >  NC_002947/4711977‑4712270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.