New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1401051 =	16 (0.310)	3 (0.060)	3/248	NT	14.5%	coding (46/648 nt)	queE	7‑carboxy‑7‑deazaguanine synthase
	?	NC_002947	1401099 =	20 (0.410)					coding (94/648 nt)	queE	7‑carboxy‑7‑deazaguanine synthase

GTGCCTGACGGAGGCGGACAGCCTGTTTAGCTGTCACGCCCGTGGCGAGCATGCAAGACACATTACGCATCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCTGTGTCACCGGTGGCGAACCACTGGCCCAGC  >  NC_002947/1400956‑1401243                                                                                                                                                |                                                                                                                                                 ccggccacttgttcgaggatcgaatcaagggtgcgtacggtaccgccactgaaggcataggcactgtcgcagtactggcaacgcagggggcaaccGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCg                                                                                                                                                  <  8:195710‑M1/49‑1 (MQ=255) ccggccacttgttcgaggatcgaatcaagggtgcgtacggtaccgccactgaaggcataggcactgtcgcagtactggcaacgcagggggcaaccGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCg                                                                                                                                                  >  7:195710‑M1/96‑144 (MQ=255)        aCGGAGGCGGACAGCCTGTTTAGCTGTCACGCCCGTGGCGAGCATGCAAGACACATTACGCATCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCt                                                                                                                                        <  3:101968/147‑1 (MQ=255)                              gCTGTCACGCCCGTGGCGAGCATGCAAGACACATTACGCATCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGc                                                                                                                >  8:46026/1‑149 (MQ=255)                                                  cATGCAACACACATTACGCATCACCGAAGTCTTTTACTCTTTGCAGGGGGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTa                                                                                            <  6:218358/149‑1 (MQ=255)                                                        aGACACATTACGCATCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGtt                                                                                                                                               <  3:151013/92‑1 (MQ=255)                                                        aGACACATTACGCATCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGtt                                                                                                                                               >  4:151013/1‑92 (MQ=255)                                                                  cGCATCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGa                                                                            <  7:282738/149‑1 (MQ=255)                                                                     aTCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTc                                                                         >  3:56305/1‑149 (MQ=255)                                                                          cGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATcc                                                                    <  4:75610/149‑1 (MQ=255)                                                                                 ttttACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAAc                                                              >  5:122801/1‑148 (MQ=255)                                                                                 ttttACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAAc                                                              >  8:12097/1‑148 (MQ=255)                                                                                     aCTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGt                                                          <  7:46026/148‑1 (MQ=255)                                                                                         tttGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCg                                                     >  1:327013/1‑149 (MQ=255)                                                                                           tGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGcc                                                      <  8:178535/146‑1 (MQ=255)                                                                                           tGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCgg                                                    <  4:56305/148‑1 (MQ=255)                                                                                               cggtgaggcgcacaaataccgtgggcagcccggccgttcgcgtctcaccGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCgg                                                    <  8:195710‑M2/95‑1 (MQ=255)                                                                                               cggtgaggcgcacaaataccgtgggcagcccggccgttcgcgtctcaccGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCgg                                                    >  7:195710‑M2/50‑144 (MQ=255)                                                                                                ggtgaggcgcacaaataccgtgggcagcccggccgttcgcgtctcaccGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCa                                               >  3:188483‑M2/49‑148 (MQ=255)                                                                                                GGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCa                                               <  7:303075‑M1/148‑1 (MQ=255)                                                                                                      aCGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACcgcg                                        >  4:192573/1‑149 (MQ=255)                                                                                                        gcgAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTc                                                                  >  1:171577/1‑121 (MQ=255)                                                                                                        gcgAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTc                                                                  <  2:171577/121‑1 (MQ=255)                                                                                                          gAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTAc                                    >  1:230372/1‑149 (MQ=255)                                                                                                             cGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTc                                 <  7:12097/149‑1 (MQ=255)                                                                                                                ccGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCtgt                              >  3:102857/1‑149 (MQ=255)                                                                                                                 cGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCtgtg                             >  3:161879/1‑149 (MQ=255)                                                                                                                          cACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGCCAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCTGTGTCACCGGTg                    >  2:208743/1‑149 (MQ=255)                                                                                                                                     tgCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCTGTGTCACCGGTGGCGAACCACTg         <  6:122801/149‑1 (MQ=255)                                                                                                                                       cgcCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCATTGGCGGTACCGTACCCACACtt                                                                              >  4:205432/1‑78 (MQ=255)                                                                                                                                       cgcCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCtt                                                                              <  3:205432/78‑1 (MQ=255)                                                                                                                                        gcCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCTGTGTCACCGGTGGCGAACCACTGgcc      >  3:67196/1‑149 (MQ=255)                                                                                                                                           tcaccGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAATAAGTGGCCGGCTTCAAACCGCGCTACGTCTGTGTCACCGGTGGCGAACCACTGgcccag   >  6:281529‑M2/6‑149 (MQ=255)                                                                                                                                            caccGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCTGTGTCACCGGTGGCGAACCACTGgcccagc  >  5:86552‑M2/5‑149 (MQ=255)                                                                                                                                             accGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACcgcg                                        >  8:152106‑M2/4‑110 (MQ=255)                                                                                                                                                |                                                                                                                                                 GTGCCTGACGGAGGCGGACAGCCTGTTTAGCTGTCACGCCCGTGGCGAGCATGCAAGACACATTACGCATCACCGAAGTCTTTTACTCTTTGCAGGGTGAGACGCGAACGGCCGGGCTGCCCACGGTATTTGTGCGCCTCACCGGTTGCCCCCTGCGTTGCCAGTACTGCGACAGTGCCTATGCCTTCAGTGGCGGTACCGTACGCACCCTTGATTCGATCCTCGAACAAGTGGCCGGCTTCAAACCGCGCTACGTCTGTGTCACCGGTGGCGAACCACTGGCCCAGC  >  NC_002947/1400956‑1401243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.