New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1602950 =	39 (0.760)	4 (0.080)	4/240	NT	9.8%	coding (797/1215 nt)	PP_5469	SAM‑dependent methyltransferase
	?	NC_002947	1603031 =	38 (0.800)					coding (878/1215 nt)	PP_5469	SAM‑dependent methyltransferase

CCAGGCCTGGAGTTCCAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTGCGCTGTACCTGGAAGCCTGTGGC  >  NC_002947/1602892‑1603179                                                                                                                                             |                                                                                                                                                      ccAGGCCTGGAGTTCCAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGcc                                                                                                                                              >  5:291217/1‑149 (MQ=255)    ggCCTTGAGTTCCAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGGGATGATCGCCTTGCATGCCTGGGACATCGCGACCGACTACGCC‑ATGCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGtg                                                                                                                                           <  7:113369/149‑1 (MQ=255)       cTGGAGTTCCAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGtgctg                                                                                                                                        >  1:178735/1‑149 (MQ=255)          gAGTTCCAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGtgctgc                                                                                                                                       <  5:39530/147‑1 (MQ=255)                cAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGc                                                                                                                                <  4:292436/148‑1 (MQ=255)                cAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCa                                                                                                                               <  7:124947/149‑1 (MQ=255)                cAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGAGCATCATGTGCTCGCCGTGCTGCCACAAg                                                                                                                                 >  6:24798/1‑147 (MQ=255)                  gtgtGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGa                                                                                                                             <  5:28560/149‑1 (MQ=255)                        tgATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGtgctgc                                                                                                                                       <  1:285718/133‑1 (MQ=255)                        tgATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGtgctgc                                                                                                                                       >  2:285718/1‑133 (MQ=255)                          aTGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATccgc‑ccg                                                                                                                    >  1:324476/1‑149 (MQ=255)                          aTGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATccgc‑cc                                                                                                                     <  6:291217/148‑1 (MQ=255)                                gcAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTg                                                                                                              >  6:24021/1‑149 (MQ=255)                                  aGCGTGGTGCCTGAGGCCATCGATGTGATGCTCGCCTTGGATGCCTGTGACTTCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGca                                                                                                            <  7:91040/149‑1 (MQ=255)                                     gtggtgCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑TTCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAg                                                                                                         >  5:249639/1‑149 (MQ=255)                                          gCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATcatcat                                                                                                                                                       >  2:169992/1‑99 (MQ=255)                                             tGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGt                                                                                                 >  6:44334/1‑149 (MQ=255)                                                             gatgatcgcggcgttgcagcggatgccagtgtggatggcgtagtcggtggcgatgtcacaggcatgcaaggcgatcatcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCAtgc                                                                                  >  6:41451‑M2/81‑149 (MQ=255)                                                              TGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCAtgctg                                                                                <  2:136730‑M1/149‑1 (MQ=255)                                                                  tcgcggcgttgcagcggatgccagtgtggatggcgtagtcggtggcgatgtcacaggcatgcaaggcgatcatcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAg                                                                             >  5:26246‑M2/76‑149 (MQ=255)                                                                  CGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCAGcaaccccgg                                                                                   >  3:138394‑M1/1‑139 (MQ=255)                                                                  CGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCAGcaaccccgg                                                                                   <  4:138394‑M1/142‑4 (MQ=255)                                                                   GCCTTGCATGCCTGGGACATCGCCACCGACTACGCC‑ATCCACACTGTCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAg                                                                             >  4:235735‑M1/1‑147 (MQ=255)                                                                    CCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTAc                                                                          <  6:278701‑M1/149‑1 (MQ=255)                                                                     cTTGCATGCCTGTGACATCGCGACGGACTACGGC‑ATCATCTCTGGCATCCGCTGCTACGCAGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGG‑CCGCATCTGCACAGCCgggtg                                                                                                  <  4:319390/124‑3 (MQ=255)                                                                     cTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCgggg                                                                                                  >  3:319390/1‑124 (MQ=255)                                                                           tGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTg                                                                    >  2:127154/1‑148 (MQ=255)                                                                             ccTGTGACATCGCCACCGACTACGCCGATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCa                                                                  >  1:172776/1‑149 (MQ=255)                                                                              cTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCAcc                                                                >  5:268061/1‑149 (MQ=255)                                                                               tgtgACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCAAACACAAGCAGTACAACGCCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCAcc                                                                >  1:107413/1‑149 (MQ=255)                                                                                gtgACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTg                                                              >  6:120541/1‑149 (MQ=255)                                                                                gtgACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTg                                                              >  8:42137/1‑149 (MQ=255)                                                                                 tgACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCt                                                               <  1:127154/147‑1 (MQ=255)                                                                                 tgACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTgg                                                             <  6:268061/149‑1 (MQ=255)                                                                                  gatgccagtgtggatggcgtagtcggtggcgatgtcacaggcatgcaaggcgatcatcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTgg                                                             <  6:26246‑M2/90‑1 (MQ=255)                                                                                        gCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCcag                                                        >  7:241495/1‑147 (MQ=255)                                                                                        gCCACCGACTACCCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCcagca                                                      <  2:52988/149‑1 (MQ=255)                                                                                           aCCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGc                                                   <  2:178735/149‑1 (MQ=255)                                                                                                cTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGaaa                                              <  7:42137/149‑1 (MQ=255)                                                                                                cTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGaaa                                              <  2:172776/149‑1 (MQ=255)                                                                                                     cc‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGcc                                                                      >  8:234871/1‑120 (MQ=255)                                                                                                     cc‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGcc                                                                      <  7:234871/120‑1 (MQ=255)                                                                                                                  gCATCCGCTGCAACGCCGCGAGCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCt                              <  5:24798/148‑1 (MQ=255)                                                                                                                     tCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCtgcgt                          >  4:284081/1‑149 (MQ=255)                                                                                                                         ggcatgcaaggcgatcatcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTgcgc                      <  5:41451‑M2/129‑1 (MQ=255)                                                                                                                          tGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGAc                                       >  3:66296/1‑131 (MQ=255)                                                                                                                          tGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGAc                                       <  4:66296/131‑1 (MQ=255)                                                                                                                            cAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTGCGCTg                    >  8:34103/1‑148 (MQ=255)                                                                                                                                   gcgatcatcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTGCGCTGTACCTgg             >  6:234742‑M2/11‑148 (MQ=255)                                                                                                                                        catcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCg                                                 >  2:200399‑M2/6‑107 (MQ=255)                                                                                                                                        catcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCg                                                 <  1:200399‑M2/102‑1 (MQ=255)                                                                                                                                          tcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTGCGCTGTACCTGGAAGCCtgt     <  1:136730‑M2/146‑1 (MQ=255)                                                                                                                                          tcaTGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTGCGCTGTACCTGGAAGCCtgt     <  5:44334‑M2/146‑1 (MQ=255)                                                                                                                                             tgtgCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTGCGCTGTACCTGGAAGCCTGGGGc  <  5:278701/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      CCAGGCCTGGAGTTCCAGTGTGGTGATGTGCGCAGCGTGGTGCCTGAGGCCATCGAGGTGATGATCGCCTTGCATGCCTGTGACATCGCCACCGACTACGCC‑ATCCACACTGGCATCCGCTGCAACGCCGCGATCATCATGTGCTCGCCGTGCTGCCACAAGCAGATCCGC‑CCGCAACTGCACAGCCCGGGGTTGCTGCAACCCATGCTGCAGTACGGCCTGCACCTGGGCCAGCAGGCCGAAATGCTGACCGACAGCCTGCGTGCGCTGTACCTGGAAGCCTGTGGC  >  NC_002947/1602892‑1603179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.