New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1656936 = | 60 (1.160) | 4 (0.080) | 4/250 | NT | 6.9% | coding (1558/1698 nt) | PP_1450 | TPS family activation/secretion protein |
? | NC_002947 | 1656995 = | 50 (1.010) | coding (1499/1698 nt) | PP_1450 | TPS family activation/secretion protein |
GGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCA > NC_002947/1656849‑1657130 | cggtcccagcagcgccgtctggcgcaatacgttcagccaggcgctgccacggacctgggccccacctttcgagatacgcccctacatCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATg > 5:130351‑M1/88‑149 (MQ=255) gccagcagcgccgtctggcgcaatacgttcagccaggcgctgccacggacctgggccccacctttcgagatacgcccctacatCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAgg > 1:58948‑M1/84‑149 (MQ=255) aGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAggg < 4:302672/149‑1 (MQ=255) aGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAggg < 3:194278/149‑1 (MQ=255) gTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGc > 4:264386/1‑149 (MQ=255) gTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGc < 5:211105/149‑1 (MQ=255) gTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGc > 8:101843/1‑149 (MQ=255) gtgtACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTAtc < 6:202767/147‑1 (MQ=255) ggCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCATCCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTg < 7:261640/149‑1 (MQ=255) gcgTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTgggg > 4:49090/1‑149 (MQ=255) gTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGt > 8:261713/1‑143 (MQ=255) gTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGt < 7:261713/143‑1 (MQ=255) ttGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTTCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTAGAAAGGTGGGGcc > 1:90880/1‑148 (MQ=255) gTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAg > 8:189106/1‑148 (MQ=255) gTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAg < 7:189106/148‑1 (MQ=255) gTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTgg > 8:209573/1‑138 (MQ=255) gTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTgg < 7:209573/138‑1 (MQ=255) gTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGCTcc > 2:317713/1‑149 (MQ=255) gcaggcgGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTggg > 5:169054/1‑131 (MQ=255) gcaggcgGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTggg < 6:169054/131‑1 (MQ=255) aggcgGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGGTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGGGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAgcgc > 5:264416/1‑149 (MQ=255) aggcgGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAgcgc > 5:189378/1‑149 (MQ=255) aggcgGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAgcgc > 5:173677/1‑149 (MQ=255) gCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGccc < 3:310939/125‑1 (MQ=255) gCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGccc > 4:310939/1‑125 (MQ=255) cGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAAc < 3:264386/149‑1 (MQ=255) ggCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGACTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGAGGCAGCGCCTGGCTGAACg > 6:6392/1‑148 (MQ=255) aGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTAtt < 6:189378/149‑1 (MQ=255) gCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCGGTGGCAGCGCCTGGCTGAACGTATTgc > 4:277984/1‑149 (MQ=255) gCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTgc > 4:12877/1‑149 (MQ=255) cTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTgcg > 4:216283/1‑149 (MQ=255) ttCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGa > 7:159267/1‑149 (MQ=255) aaCCCTGCGGCGGCCCCGGCCAGGCGGTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGgc > 1:8831/1‑149 (MQ=255) aaCCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGgc > 4:69117/1‑149 (MQ=255) aaCCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGgc > 4:292557/1‑149 (MQ=255) aaCCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGgc < 3:216283/149‑1 (MQ=255) cccTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTAtc < 8:150824/135‑2 (MQ=255) cccTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGGGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTAtc > 7:150824/1‑134 (MQ=255) cggcggCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCgctgc < 3:277984/147‑1 (MQ=255) cctacatcggcctggacctgggctgggttcgcaccgccgaaggcaaaccgtcacagcgcctggccgATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGc > 1:58948‑M2/67‑149 (MQ=255) ggcCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCAc < 2:8831/149‑1 (MQ=255) catcggcctggacctgggctgggttcgcaccgccgaaggcaaaccgtcacagcgcctggccgATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGGACCg > 5:130351‑M2/63‑149 (MQ=255) cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGTCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCg > 7:290753/1‑148 (MQ=255) cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCgg < 3:292557/149‑1 (MQ=255) cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGGCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCg < 7:303878/148‑1 (MQ=255) cccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGACCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCg > 8:303878/1‑148 (MQ=255) ccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCg > 1:48615/1‑147 (MQ=255) ccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGa < 7:41432/149‑1 (MQ=255) ccGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGa < 8:159267/149‑1 (MQ=255) aGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgt < 3:12877/149‑1 (MQ=255) gcgcTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAgtgt > 7:215608/1‑149 (MQ=255) aCGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGa < 2:48615/149‑1 (MQ=255) ggttcgcaccgccgaaggcaaaccgtcacagcgcctggccgATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGGACCGGAGTAAGTGTGCAGACGaaa < 6:130351‑M2/107‑1 (MQ=255) caaaccgtcacagcgcctggccgATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAAtcg < 2:58948‑M2/126‑1 (MQ=255) aaCCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAAtcgt < 5:6392/149‑1 (MQ=255) cagGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACca < 3:69117/149‑1 (MQ=255) tCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGAc > 4:301657/1‑112 (MQ=255) tCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGAc < 3:301657/112‑1 (MQ=255) | GGGGCAGGTCGCTGGTGTACAAGGCGCGTTGGTAGTCCAGGCGCAGGCGGCTGCCGGGCAGGCTCAGTTCCAACCCTGCGGCGGCCCCGGCCAGGCGCTGTGACGGTTTGCCTTCGGCGGTGCGAACCCAGCCCAGGTCCAGGCCGATGTAGGGGCGTATCTCGAAAGGTGGGGCCCAGGTCCGTGGCAGCGCCTGGCTGAACGTATTGCGCCAGACGGCGCTGCTGGCACCGGAGTAAGTGTGCAGACGAAAGCCGCGGACAGCCGAATCGTCGCTGACCA > NC_002947/1656849‑1657130 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |