New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2047257 | 52 (1.010) | 3 (0.060) | 3/250 | NT | 5.5% | coding (764/1197 nt) | PP_1820 | benzoate transport protein |
? | NC_002947 | = 2047296 | 53 (1.070) | coding (725/1197 nt) | PP_1820 | benzoate transport protein |
GCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCTAAAGTCCAGCAGG > NC_002947/2047149‑2047433 | gCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCAc < 8:39591‑M2/149‑2 (MQ=255) cGGCACGGGGCAGATCGCCGCGCTGATCGCCGCCAGGGTGACCCCATGCGAGCCGCACGCCGCCTGCAGCAGGGAGGCTAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCgg < 4:38989/149‑1 (MQ=255) cAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCt < 5:41539/148‑1 (MQ=255) aGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGc > 6:169835/1‑149 (MQ=255) aGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGc < 2:229036/149‑1 (MQ=255) aTCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGc > 5:47512/1‑147 (MQ=255) cgccgcGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAg < 5:5948/148‑1 (MQ=255) gcgcTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCAt > 5:249723/1‑149 (MQ=255) cgcTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCCTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATg < 1:232800/149‑1 (MQ=255) cgcTGATCGCAGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATg < 4:19850/149‑1 (MQ=255) cgccgcCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGccacca > 1:328560/1‑149 (MQ=255) gccgccAGGTTGACCCCATTCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGTGCA‑TGTTCTGCGAGGTCATGGccacca < 2:286095/148‑1 (MQ=255) gccgccAGGTGGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGGGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGccacca < 2:290825/148‑1 (MQ=255) ccgccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCcaccac > 8:45851/1‑148 (MQ=255) ccgccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCcaccac > 6:185178/1‑148 (MQ=255) cccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑t > 8:61499/1‑111 (MQ=255) cccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑t < 7:61499/111‑1 (MQ=255) cccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGc > 5:155812/1‑149 (MQ=255) tGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGAt < 3:31236/149‑1 (MQ=255) gCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATg > 5:252049/1‑149 (MQ=255) cGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCACTGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATg < 1:234449/149‑1 (MQ=255) gAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCt > 8:247395/1‑149 (MQ=255) gCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGa < 6:252049/149‑1 (MQ=255) cGAACGGCGCCAGCAGCAGCGAGGCAACGCCGGTCGCCGAAATCAGCGGCGCGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGCACAGCGGAATGCCGATGCTGATg > 5:246471/1‑149 (MQ=255) cGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATg > 5:262036/1‑149 (MQ=255) gcgcCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTgcc < 7:39591/149‑1 (MQ=255) cagcagcagCGAGTCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCa < 8:140074/149‑1 (MQ=255) agcGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGaa < 1:17843/149‑1 (MQ=255) cGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGc > 5:172390/1‑149 (MQ=255) aGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCtt > 1:24420/1‑149 (MQ=255) gCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCgag > 5:171793/1‑141 (MQ=255) gCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCgag < 6:171793/141‑1 (MQ=255) gCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgg > 3:131593/1‑149 (MQ=255) cAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTggg < 4:131593/149‑1 (MQ=255) aaaGCCGGTGGCCGACCTCAGCGGCGAGGCCGGTACCTCGTAGCCGTCCGCACGCAGGACGGCCACGCCGGGCA‑TGTTCCGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg < 6:249723/149‑1 (MQ=255) aaaGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATg < 1:257480/124‑1 (MQ=255) aaaGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATg > 2:257480/1‑124 (MQ=255) aaaGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg < 6:47512/149‑1 (MQ=255) aaaGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg > 8:200724/1‑149 (MQ=255) aaaGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg > 4:138537/1‑149 (MQ=255) aGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGggtg < 2:24420/149‑1 (MQ=255) cGGTGGCCGACATCAGCGGCGAGGCCGGGACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTGCTGCGAGGGCATGGCCACCACGAACAGCGGAATCCCGATGCTGATGGGCGCCGCCAGCGAGAAGCTTGGGGTTGTc < 6:246471/149‑1 (MQ=255) ggTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTcc < 2:328560/149‑1 (MQ=255) gTGGCCTTAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCGAGCGTGAAGCTTGGGGTGGTCca < 4:315164/149‑1 (MQ=255) cGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCAAGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCg > 4:57874/1‑149 (MQ=255) aaaTCCGCGGCGAGGCCTGTACCTGGTAGCCGTGGGCACGCAGGACGGCCACGCCGGGCT‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGTATGCCGATGCTGATGGTTGCCGCCAGCTAGAAGCTTGGGGTGGTCCACTCAGGc < 6:7517/149‑1 (MQ=255) ggcgAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCAcgccgctgatttcggccaccggctttgcctcgctgctgctggcgccgttcggctcgcatggggtcaacctggcggcgatcagcgcggcgatctgcaccgggccgca < 2:263849‑M2/149‑107 (MQ=255) gAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTc < 5:185178/149‑1 (MQ=255) gAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTc < 7:45851/149‑1 (MQ=255) ggCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCAcgccgctgatttcggccaccggctttgcctcgctgctgctggcgccgttcggctcgcatgggg < 1:88851‑M2/101‑64 (MQ=255) ggCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCAcgccgctgatttcggccaccggctttgcctcgctgctgctggcgccgttcggctcgcatgggg > 2:88851‑M2/1‑38 (MQ=255) gCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAg < 6:155812/149‑1 (MQ=255) ccTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGaa < 7:247395/148‑1 (MQ=255) tAGCCGTCGGCATGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCt < 3:57874/149‑1 (MQ=255) aGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCt > 8:248889/1‑148 (MQ=255) cGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGt < 7:283784/135‑1 (MQ=255) cGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGt > 8:283784/1‑135 (MQ=255) ggCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGGATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCa > 6:292674/1‑128 (MQ=255) ggCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGGATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCa < 5:292674/128‑1 (MQ=255) gCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCTAAAGTCCAGCAgg > 2:181036/1‑149 (MQ=255) ccACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGc < 6:322312/51‑1 (MQ=255) | GCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCA‑TGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGGCTTGGCCACTTCCAGGTGGAAGCCGCTAAAGTCCAGCAGG > NC_002947/2047149‑2047433 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |