New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2472140 | 36 (0.700) | 8 (0.220) | 6/182 | NT | 20.7% | intergenic (+44/+105) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
? | NC_002947 | = 2472186 | 36 (1.000) | intergenic (+90/+59) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
ATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACAC > NC_002947/2472041‑2472334 | aTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgta > 4:95925‑M2/1‑146 (MQ=255) tGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtag > 7:104734‑M2/1‑145 (MQ=255) aCTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtag < 5:305092‑M2/147‑5 (MQ=255) cAACCGGGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagc > 7:46938‑M2/1‑139 (MQ=255) cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgg > 8:149047‑M2/1‑139 (MQ=255) aaCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcggg > 8:106183‑M2/1‑138 (MQ=255) aaCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTg > 7:137840‑M2/1‑138 (MQ=255) aaCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGAGTGTCCACCCCCAATCAGGTg < 8:137840‑M2/139‑2 (MQ=255) aCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAGGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCGCCAATCAGGTgtaggagcgggt > 1:227126‑M2/1‑137 (MQ=255) cgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttac > 8:141997‑M2/1‑133 (MQ=255) gAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacc > 6:305092‑M2/1‑132 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAAGAGGCCGGCACAGGCTGTAAAAACTCTGaa < 1:206462/123‑1 (MQ=255) ttCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGaa > 2:206462/1‑122 (MQ=255) ttCGCGGGTAAACCCGCACCTACGCCGGGCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGGAGGAGCGGGTTTACACGCG‑AAGAGGCCGGCACAGGCTGTAAAATCTGAGAATCTCACTAGGCGCGGTTTGTacaggcg > 6:151740/1‑143 (MQ=255) tCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaag < 8:88250‑M2/149‑82 (MQ=255) gTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCGCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCt > 7:177319/1‑149 (MQ=255) tAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCt > 4:235373/1‑148 (MQ=255) cccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccc > 7:60088/1‑149 (MQ=255) cccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccc > 4:14205/1‑149 (MQ=255) ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttg < 8:5175‑M2/149‑94 (MQ=255) ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttg < 7:232092‑M2/149‑94 (MQ=255) ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttg > 6:125669‑M2/1‑56 (MQ=255) ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttg < 5:125669‑M2/149‑94 (MQ=255) ccGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAGACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAcccc > 8:62653/1‑149 (MQ=255) cGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttg < 2:199060‑M2/148‑94 (MQ=255) gCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCg > 4:59288/1‑149 (MQ=255) cTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAg > 3:944/1‑149 (MQ=255) tACGACGGCCTGCGCCCAAACACCAATGTGTATCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCAGTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAg > 5:282881/1‑148 (MQ=255) cgacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacc > 1:314667‑M2/1‑47 (MQ=255) cgacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacc < 2:314667‑M2/64‑18 (MQ=255) gacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAct < 1:70269/124‑1 (MQ=255) gacgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAct > 2:70269/1‑124 (MQ=255) ccTGCTCCCAAACACCAATGTGTGTCAACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCt < 1:195430/149‑1 (MQ=255) cTGCGCCCAAACACCAATGTGTGTCCCCCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAAt > 7:161607/1‑94 (MQ=255) cTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAAt < 8:161607/94‑1 (MQ=255) cgcCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGt < 8:60088/148‑1 (MQ=255) ccAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTacac > 8:301458/1‑149 (MQ=255) ccAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTacac > 6:53158/1‑149 (MQ=255) cacCAATGTGTGTCCACCCCCAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttggagtcattcaggcccatgaggatcttg > 7:88250‑M2/1‑29 (MQ=255) acCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCgcgc > 5:127718/1‑149 (MQ=255) ccAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCgcc < 3:235373/149‑1 (MQ=255) cAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCgccg > 4:221710/1‑149 (MQ=255) aaTGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCgccgg > 7:188112/1‑149 (MQ=255) gtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGccc > 2:35399/1‑148 (MQ=255) gtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGccc < 1:35399/148‑1 (MQ=255) gtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAATCTGTAGCCTCACACACGCCAGCATCAAGCTGGTACACAAGCGCCGGCCGcccc > 1:321744/1‑149 (MQ=38) tCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCt > 7:61855/1‑149 (MQ=255) tCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCt > 2:221268/1‑149 (MQ=255) ccACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGcc < 7:216563/113‑1 (MQ=255) ccACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGcc > 8:216563/1‑113 (MQ=255) ccccAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGttttt < 4:23773/85‑1 (MQ=255) ccccAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTtca > 2:165395/1‑149 (MQ=255) cAATCAGGTgtaggagcgggtttacccgcgaagaggccggcacaggctatagatcagctccgctccagcgcattgaccagatcatggaaggcttcgcggttggagtcattcaggcccatgaggatcttgtgcgcctccagcaccttgga > 7:5175‑M2/1‑9 (MQ=255) cAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTtcatc > 1:220147/1‑148 (MQ=255) aaTCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCa < 3:287344/66‑1 (MQ=255) aaTCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCa > 4:287344/1‑66 (MQ=255) tCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCaaa > 6:36914/1‑148 (MQ=255) gtgtAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGATTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAaca > 2:85448/1‑149 (MQ=255) gtgtAGGAGCGGGTTTACACGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAaca > 4:271257/1‑149 (MQ=255) tgtAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAacac < 8:177319/149‑1 (MQ=255) tgtAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAacac < 7:301458/149‑1 (MQ=255) | ATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCG‑AAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACAC > NC_002947/2472041‑2472334 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |