New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2764604	39 (0.760)	3 (0.060)	3/248	NT	7.3%	coding (398/1095 nt)	PP_2418	cobalamin ABC transporter substrate‑binding protein
	?	NC_002947	= 2764631	39 (0.790)					coding (371/1095 nt)	PP_2418	cobalamin ABC transporter substrate‑binding protein

TCCTTGCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATAGAGCAGCTCGGTACCGGCCTGGCCGATG  >  NC_002947/2764484‑2764777                                                                                                                                                    |                                                                                                                                                       tCCTTGCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAa                                                                                                                                                       >  2:100427‑M2/1‑148 (MQ=255)   cTTGCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAa                                                                                                                                                       <  1:117043‑M2/147‑2 (MQ=255)   cTTGCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAa                                                                                                                                                       >  2:117043‑M2/1‑146 (MQ=255)    ttGCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAagct                                                                                                                                                    <  7:182141‑M2/149‑5 (MQ=255)      gCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAagctg                                                                                                                                                   >  2:235901‑M2/1‑143 (MQ=255)      gCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAagctg                                                                                                                                                   >  2:236425‑M2/1‑143 (MQ=255)        ccTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTgggg                                                                                                                                                <  6:97110/149‑1 (MQ=255)        ccTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGAGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTgggg                                                                                                                                                >  7:143728/1‑149 (MQ=255)                   gATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGc                                                                                                                                     <  5:175817/149‑1 (MQ=255)                          gcaCGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGAGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGgcgc                                                                                                                              <  8:143728/149‑1 (MQ=255)                            aCGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCgg                                                                                                                            <  6:289048/149‑1 (MQ=255)                                       gATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGt                                                                                                                 <  8:182141/149‑1 (MQ=255)                                               gCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGcc                                                                                                     >  1:323889/1‑149 (MQ=255)                                                cTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCt                                                                                                    <  4:249104/149‑1 (MQ=255)                                                  cATCGAACTGCTCGCGGGGGGCGACCACGCCCGGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGG‑‑‑‑TGAACGccaag                                                                                                  <  6:241358/149‑4 (MQ=255)                                                   aTCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTgg                                                                                                  >  2:282585/1‑148 (MQ=255)                                                       aaCTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTc                                                                                             <  2:323889/149‑1 (MQ=255)                                                        aCTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTc                                                                                             >  6:316180/1‑148 (MQ=255)                                                        aCTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTc                                                                                             <  5:316180/148‑1 (MQ=255)                                                            ctagcgGGTGGCGACCACGCCCTCGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGc                                                                                         >  5:202641/4‑148 (MQ=255)                                                            cTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGTCCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGc                                                                                         >  5:219969/1‑148 (MQ=255)                                                               gcgGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAAt                                                                                      <  6:140094/148‑1 (MQ=255)                                                                          ccACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAAc                                                                          <  1:282585/149‑1 (MQ=255)                                                                          ccACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAAc                                                                          >  5:295086/1‑149 (MQ=255)                                                                                ccTAGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGc                                                                    >  7:226131/1‑149 (MQ=255)                                                                                       aCCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGa                                                                  >  2:54229/1‑144 (MQ=255)                                                                                       aCCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGa                                                                  <  1:54229/144‑1 (MQ=255)                                                                                       aCCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGc                                                             <  2:219299/149‑1 (MQ=255)                                                                                        ccGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGcc                                                            >  3:11071/1‑149 (MQ=255)                                                                                           aCCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGTGAGGTAACCGCCTGTTATTCCGGAAATACGTTGTTGAACCACAGCGAGGTGc                                                             >  1:271396/1‑149 (MQ=255)                                                                                            ccatccatTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGG‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGcc                                                        <  8:169929/149‑1 (MQ=255)                                                                                               tccatTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGc                                                     >  8:282894/1‑149 (MQ=255)                                                                                                 catTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCtt                                                   <  2:155541/149‑1 (MQ=255)                                                                                                   ttCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTTCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGt                                                 <  1:70005/149‑1 (MQ=255)                                                                                                      gAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCAc                                              >  1:74351/1‑149 (MQ=255)                                                                                                          tGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAg                                                      <  1:140931/137‑1 (MQ=255)                                                                                                          tGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAg                                                      >  2:140931/1‑137 (MQ=255)                                                                                                                 cgACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAagctggtcgcggcgcagttcgaatggatggtcggtgcccagggcgtggtcgccacccgcgagcagttcgatgagctgaagatccccacctacgtgctgccatcggactgcgag                                       <  6:107705‑M2/149‑114 (MQ=255)                                                                                                                   aCCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAagctggtcgcggcgcagttcgaatggatggtcggtgcccagggcgtggtcgccacccgcgagcagttcgatgagctgaagatccccacctacgtgctgccatcg                                                <  3:162944‑M2/138‑105 (MQ=255)                                                                                                                   aCCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAagctggtcgcggcgcagttcgaatggatggtcggtgcccagggcgtggtcgccacccgcgagcagttcgatgagctgaagatccccacctacgtgctgccatcg                                                >  4:162944‑M2/1‑34 (MQ=255)                                                                                                                     cAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCa                                >  6:239977/1‑148 (MQ=255)                                                                                                                       gCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATag                             <  7:282894/149‑1 (MQ=255)                                                                                                                        cTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATaga                            <  4:11071/149‑1 (MQ=255)                                                                                                                           cGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATagag                           <  6:295086/147‑1 (MQ=255)                                                                                                                             ggCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTg                                                  >  7:175451/1‑122 (MQ=255)                                                                                                                             ggCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTg                                                  <  8:175451/122‑1 (MQ=255)                                                                                                                                  ttGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATAGAGCAGCTCgg                   >  7:76365/1‑148 (MQ=255)                                                                                                                                    gCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATAGAGCAGCTCGGTAc                >  8:28109/1‑149 (MQ=255)                                                                                                                                              gCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGa                                                                            >  3:146361/1‑79 (MQ=255)                                                                                                                                              gCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGa                                                                            <  4:146361/79‑1 (MQ=255)                                                                                                                                                  cGACGCTGGGGGCGGTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATAGAGCAGCTCGGTACCGGCCTGGCCGATg  <  8:226131/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                       TCCTTGCCCTCGCAGTCCGATGGCAGCACGTAGGTGGGGATCTTCAGCTCATCGAACTGCTCGCGGGTGGCGACCACGCCCTGGGCACCGACCATCCATTCGAACTGCGCCGCGACCAGCTGCGGGCGCTTGCCGACCACCGCCTCGAAGCTGGGGTCGTTGTCGGCCAGGCGCGGCACCTTGGCGT‑‑‑‑TCACCGCCTGGTATTCCGGCAATACGTTGTTGAACCACAGCGAGGTGCCCGCCAGCTTGTCACCCAGCCCCAGGGCATAGAGCAGCTCGGTACCGGCCTGGCCGATG  >  NC_002947/2764484‑2764777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.