New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3513489	32 (0.620)	3 (0.060)	3/250	NT	8.5%	coding (2157/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	= 3513524	34 (0.680)					coding (2192/4158 nt)	PP_3108	rhs family protein

CCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGTGGATAACCTGACCCGGCGTTTCAG  >  NC_002947/3513384‑3513665                                                                                                                                             |                                                                                                                                              ccACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGtt                                                                                                                                        <  8:97893/148‑1 (MQ=255) ccACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGtt                                                                                                                                        >  7:97893/1‑148 (MQ=255) ccACCCGGACGGCACCACGCAAACCTTCACCTACAACGTCTACGCTCACGTGCTCACCCACACCGACCGCAAGGGCCAGACCACCCGCCTGATGCGCCCGGCCCGCGGCCTGCCGAGCAGCCGCCAGCATGCCAAGCGCCAGCGGGTTc                                                                                                                                       >  4:112564/1‑149 (MQ=255)                               cTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGAc                                                                                                                         <  1:121704/133‑1 (MQ=255)                               cTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGAc                                                                                                                         >  2:121704/1‑133 (MQ=255)                               cTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGa                                                                                                         >  7:196594/1‑149 (MQ=255)                                     cGTTTACGGTCAGGTGCTCAGCCACACCGTCGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGACTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCgcgc                                                                                                   <  7:279821/149‑1 (MQ=255)                                       tCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTg                                                                                                 <  6:262955/149‑1 (MQ=255)                                            ggTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGc                                                                                                                    <  7:17208/125‑1 (MQ=255)                                            ggTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGc                                                                                                                    >  8:17208/1‑125 (MQ=255)                                              tCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAAc                                                                                           >  7:297653/1‑148 (MQ=255)                                                  gTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACTAGGCCATGCGCCTGACCGCGCTGGTCAACGaaaa                                                                                      <  8:297653/149‑1 (MQ=255)                                                          ccACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCa                                                                              >  1:291265/1‑149 (MQ=255)                                                                cGACGGCAAGGTCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACa                                                                        <  5:253643/149‑1 (MQ=255)                                                                    ggCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCtt                                                                    >  7:112088/1‑149 (MQ=255)                                                                       aaGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGc                                                                 <  8:112088/149‑1 (MQ=255)                                                                             cAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATgcgc                                                                                                             >  5:253938/1‑99 (MQ=255)                                                                             cAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATgcgc                                                                                                             <  6:258201/99‑1 (MQ=255)                                                                             cAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATgcgc                                                                                                             <  6:253938/99‑1 (MQ=255)                                                                             cAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATgcgc                                                                                                             >  5:258201/1‑99 (MQ=255)                                                                                  caccCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTacga                                                           >  1:210284/1‑144 (MQ=255)                                                                                  caccCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTacga                                                           <  2:210284/144‑1 (MQ=255)                                                                                    cccGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCg                                                    >  3:313955/1‑149 (MQ=255)                                                                                    cccGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCg                                                    >  3:310593/1‑149 (MQ=255)                                                                                       gCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAGCGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGAc                                                 >  1:124297/1‑149 (MQ=255)                                                                                                gcACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAgcgggccgtgcgcatcaggcgggtggtctggcccttgccgtcggtgtggctgagcacctgaccgtagacgttgtaggtgaagctttccgtg                                                    <  1:248472‑M2/137‑92 (MQ=255)                                                                                                gcACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAgcgggccgtgcgcatcaggcgggtggtctggcccttgccgtcggtgtggctgagcacctgaccgtagacgttgtaggtgaagctttccgtg                                                    >  2:248472‑M2/1‑46 (MQ=255)                                                                                                gcACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGc                                        <  4:313955/149‑1 (MQ=255)                                                                                                          cgGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGc                              <  6:144660/149‑1 (MQ=255)                                                                                                              cTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAgcgggccgtgcgcatcaggcgggtggtctggcccttgccgtcggtgtggctgagcacctgaccgtagacgttgtaggtgaagctttccgtggtgccgtccgggtggctgatgcgcag                          <  6:28907‑M2/149‑118 (MQ=255)                                                                                                              cTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGt                          <  2:291265/149‑1 (MQ=255)                                                                                                               tGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGTg                         >  4:312180/1‑149 (MQ=255)                                                                                                                    agcagcCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCaa                                                                                            <  3:157993/77‑1 (MQ=255)                                                                                                                    agcagcCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCaa                                                                                            >  4:157993/1‑77 (MQ=255)                                                                                                                            ccAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGTGGATAACCTGAccc            <  3:112564/149‑1 (MQ=255)                                                                                                                            ccAGGATGCCAAGGGCCAGCGGGTTCGCTAAGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGTGGATAACCTGAccc            >  8:300652/1‑149 (MQ=255)                                                                                                                               ggATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAaacaac                                                                                  <  3:147780/76‑1 (MQ=255)                                                                                                                               ggATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAaacaac                                                                                  >  4:147780/1‑76 (MQ=255)                                                                                                                               ggATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGTGGATAACCTGACCCGGc         <  8:196594/149‑1 (MQ=255)                                                                                                                                      aaGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGTGGATAACCTGACCCGGCGTTTCAg  >  8:168811/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                              CCACCCGGACGGCACCACGGAAAGCTTCACCTACAACGTCTACGGTCAGGTGCTCAGCCACACCGACGGCAAGGGCCAGACCACCCGCCTGATGCGCACGGCCCGCGGCCTGCCGAGCAGCCGCCAGGATGCCAAGGGCCAGCGGGTTCGCTACGAGTACGACAAGGCCATGCGCCTGACCGCGCTGGTCAACGAAAACAACGCCACGTACAGCTTTGCCTACGACGCTTCGGACCGACTGAGCGAAGAAGTGCGGGTGGATAACCTGACCCGGCGTTTCAG  >  NC_002947/3513384‑3513665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.