New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4626524 =	NA (NA)	11 (0.210)	5/260	NT	NA	coding (980/1533 nt)	PP_4091	transposase
	?	NC_002947	4626581 =	NA (NA)					coding (923/1533 nt)	PP_4091	transposase

TTTGTTGATCATCGTCAGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAA  >  NC_002947/4626439‑4626669                                                                                                                                                |                                                                                         tttGTTGATCATCGTCAGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCg                                                                                     >  5:164597/1‑148 (MQ=34)     ttgATCATCGTCAGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAat                                                                                 >  6:178903/1‑148 (MQ=34)       gATCATCGTCAGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAatcat                                                                              >  7:148341/1‑149 (MQ=34)        atcatcGTCAGCGCAACATCGGCGCGACCGGGCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGCACATGCGCCATGCACGCCAGTCTTTCAACGCCCGGCTGTAGCGCCACCGCGTTGTAACCGGCGTAatcatc                                                                             >  7:165706/1‑149 (MQ=255)         tcatcGTCATCTCAACATCGGCGCTACCGGTATTGCACTTAGGCTGCACATTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCg                                                                            <  5:177573/149‑1 (MQ=11)            tcGTCAGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGt                                                                          >  2:225414/1‑148 (MQ=34)              gTCAGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGtcat                                                                       >  3:177240/1‑149 (MQ=34)                 aGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCAc                                                                    >  6:119817/1‑149 (MQ=34)                  gcgcAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACg                                                                   >  5:249791/1‑149 (MQ=34)                             gcgcGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAAGTTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGa                                                          >  1:73241/1‑148 (MQ=21)                              cgcgACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAg                                                       <  5:178903/149‑1 (MQ=34)                                           gCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAgg                                           <  1:18120/148‑1 (MQ=32)                                             ccTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGgcgc                                        <  2:106106/149‑1 (MQ=32)                                                   gCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGc                                  <  5:242746/149‑1 (MQ=32)                                                      gCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCTCGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCAcc                               >  1:232321/1‑149 (MQ=17)                                                       cACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCAcct                              >  3:211927/1‑149 (MQ=32)                                                        aCCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCAcctc                             >  5:171859/1‑149 (MQ=32)                                                         ccTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCAcctcc                            <  8:148341/149‑1 (MQ=32)                                                         ccTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCAcctcc                            <  8:43864/149‑1 (MQ=32)                                                           ttCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTg                          >  8:256767/1‑149 (MQ=32)                                                                   ttCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGgcgc                                        <  4:69841/127‑1 (MQ=32)                                                                   ttCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGgcgc                                        >  3:69841/1‑127 (MQ=32)                                                                       acgaA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCg                                                                                     >  2:290729/1‑78 (MQ=34)                                                                       acgaA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCg                                                                                     <  1:290729/78‑1 (MQ=34)                                                                         gaA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtgg            >  3:83776/1‑149 (MQ=32)                                                                          aa‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTggtggt           <  2:73241/149‑1 (MQ=32)                                                                                 cGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAAt      <  2:232321/148‑1 (MQ=32)                                                                                   ccGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCg    >  3:63360/1‑148 (MQ=32)                                                                                    cGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGaa  >  7:197311/1‑149 (MQ=32)                                                                                                                                                |                                                                                         TTTGTTGATCATCGTCAGCGCAACATCGGCGCGACCGGTCTTGCCCTTAGGCTGCACCTTCTGCGCTTCGACGAA‑TTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAA  >  NC_002947/4626439‑4626669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.