| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4759856 = | 60 (1.160) | 4 (0.080) | 4/238 | NT | 7.4% | intergenic (‑73/‑83) | pvdP/pvdM | pyoverdine biosynthesis‑like protein/dipeptidase |
| ? | NC_002947 | 4759907 = | 45 (0.950) | intergenic (‑124/‑32) | pvdP/pvdM | pyoverdine biosynthesis‑like protein/dipeptidase | |||||
AAGCCTCTCCGAGAAATCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGTATATCAGCCTGGCCGCCACCTTGACCGTCGGTGCCGGG > NC_002947/4759761‑4760052 | aaGCCTCTCCGAGAAATCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCt < 5:265695/148‑1 (MQ=255) tctcCGAGAAATCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCcgcg > 3:13740/1‑149 (MQ=255) cGAGAAATCGTCATTGAACTACCTGTGCCAGGCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGt < 7:175369/146‑1 (MQ=255) gagaAATCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCa > 4:63842/1‑148 (MQ=255) gagaAATCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCa < 3:63842/148‑1 (MQ=255) tcgtcatttcggtctcagtaggttcaccgcagaggttcgggcctggggccattgctacctggagggaacgagtgcacgcggcagAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCt < 3:205836‑M1/53‑1 (MQ=255) tcgtcatttcggtctcagtaggttcaccgcagaggttcgggcctggggccattgctacctggagggaacgagtgcacgcggcagAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCt > 4:205836‑M1/85‑137 (MQ=255) aTCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGtt < 3:244018/149‑1 (MQ=255) tCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGt < 1:156892/139‑1 (MQ=255) tCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGt > 2:156892/1‑139 (MQ=255) gTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTcc < 5:253682/148‑1 (MQ=255) tCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCATTCCCt > 7:94236/1‑149 (MQ=255) aTTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTc > 7:186139/1‑148 (MQ=255) ttGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCa < 3:252580/149‑1 (MQ=255) gAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAg < 4:13740/148‑1 (MQ=255) cTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAAt > 2:93277/1‑149 (MQ=255) tgCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGc < 6:249365/149‑1 (MQ=255) ccAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGccc > 3:174697/1‑149 (MQ=255) ccAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGAAAGAAAATTTAACCGACCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCCCTCGTTCCCTCCAGGTAGCAATGGccc > 6:322381/1‑149 (MQ=255) gTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCAc < 6:7533/120‑1 (MQ=255) gTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCAc > 5:7533/1‑120 (MQ=255) gTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGcc > 1:40695/1‑149 (MQ=255) ttATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGccc > 2:45006/1‑149 (MQ=255) tATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGccc > 2:221550/1‑148 (MQ=255) gCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAAcc > 8:161405/1‑149 (MQ=255) gCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAAc < 5:247943/148‑1 (MQ=255) gCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAAc < 6:139204/148‑1 (MQ=255) cGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACctc > 8:194125/1‑149 (MQ=255) cTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTg < 1:221550/149‑1 (MQ=255) acacGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGt > 1:214362/1‑149 (MQ=255) ggCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCACCAGGTa > 2:93838/1‑115 (MQ=255) ccATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCATTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTa < 8:94236/149‑1 (MQ=255) cATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTAc < 1:93277/149‑1 (MQ=255) cATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTAc < 6:322323/149‑1 (MQ=255) aTCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACt < 4:174697/149‑1 (MQ=255) gAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTAc < 7:236592/145‑1 (MQ=255) gAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTAc > 8:236592/1‑145 (MQ=255) ggCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGAcc < 1:115891/149‑1 (MQ=255) tAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGa > 7:104530/1‑148 (MQ=255) cGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATgac < 8:104530/149‑1 (MQ=255) gTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATgac > 7:284145/1‑148 (MQ=255) aaGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGTACCTACTGAGACCGAAATga < 2:30179/136‑1 (MQ=255) aaGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGTACCTACTGAGACCGAAATga > 1:30179/1‑136 (MQ=255) aaGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTg < 2:40695/149‑1 (MQ=255) gAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCTGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTgg > 1:16467/1‑148 (MQ=255) gAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTgg > 5:30698/1‑148 (MQ=255) agaaatttaaccggccctccagtcacgggcgcgccgtcaggacggttaaatttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATgacga < 3:205836‑M2/84‑1 (MQ=255) agaaatttaaccggccctccagtcacgggcgcgccgtcaggacggttaaatttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATgacga > 4:205836‑M2/54‑137 (MQ=255) AACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGcc < 5:220675‑M1/149‑1 (MQ=255) ACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGcc > 7:194125‑M1/1‑148 (MQ=255) ccctccagtcacgggcgcgccgtcaggacggttaaatttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTg > 3:30130‑M2/40‑133 (MQ=255) ccctccagtcacgggcgcgccgtcaggacggttaaatttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTg < 4:30130‑M2/94‑1 (MQ=255) cTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGtat < 2:214362/148‑1 (MQ=255) gAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGGGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGTATATCAGCCTGGCCGCCACCTTGa > 8:280532/1‑149 (MQ=255) gggCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCTGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGTATATCAGCCTGGCCGCCACCTTGAcc < 2:16467/149‑1 (MQ=255) cggttaaatttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGTATATCAGCCTGGCCGCCACCTTGACCGTCg > 7:293949‑M2/12‑149 (MQ=255) atttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGTATATCAGCCTGGCCGCCACCTTGACCGTCg > 7:64179‑M2/5‑142 (MQ=255) atttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGTATATCAGCCTGGCCGCCACCTTGACCGTCg < 8:64179‑M2/138‑1 (MQ=255) tttCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTTCGGTGAACCTACTGAGACCGAAATGACCAAAGCACGCTGGAAAAAAGCCTTGTATAACAGCCTGGCCGCCACCTTGACCGTCGGTGCCggg > 7:231148‑M2/4‑149 (MQ=255) | AAGCCTCTCCGAGAAATCGTCATTGAACTACCTGTGCCAGTCGTTATGGCCGCTTAACACGGCCCATCGAAGGCTAGAACGTTGAGCTGGCAAGAAAATTTAACCGTCCTGACGGCGCGCCCGTGACTGGAGGGCCGGTTAAATTTCTGCCGCGTGCACTCGTTCCCTCCAGGTAGCAATGGCCCCAGGCCCGAACCTCTGCGGTGAACCTACTGAGACCGAAATGACGACAGCACGCTGGAAAAAAGCCTTGTATATCAGCCTGGCCGCCACCTTGACCGTCGGTGCCGGG > NC_002947/4759761‑4760052 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |