New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4765593	52 (1.010)	3 (0.060)	3/248	NT	5.9%	coding (246/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	= 4765635	46 (0.930)					coding (288/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA

CCAGCCGCTGGCCAGCGCCTTGTTGGCCTTCGGCTCGCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAACCACCGAGAACACCGGTTCCTATACCACCGGCAGCA  >  NC_002947/4765488‑4765783                                                                                                                                                     |                                                                                                                                                     ccAGCCGCTGGCCAGCGCCTTGTTGGCCTTCGGCTCGCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTa                                                                                                                                                     <  4:5049‑M2/149‑2 (MQ=255)                cgcCTTGTTGGCCTTCGGCTCGCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTAcc                                                                                                                                      <  5:318536/149‑1 (MQ=255)                  ccTTGTTGGCCTTCGGCTCGCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAg                                                                                                                                    <  2:309841/149‑1 (MQ=255)                      gttgGCCTTCGGCTCGCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGAt                                                                                                                                  >  3:317445/1‑147 (MQ=255)                      gttgGCCTTCGGCTCGCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGAt                                                                                                                                  <  4:317445/147‑1 (MQ=255)                                     gCAATCGAACCTGCAGGTGCTCTATAGCGCCACAGGACGTGGAAGGAAAGCGCACCAGCGCACTGACCGGTGCAATGGAGCCCGCCCCGGCCCTGTCGCGCCTCCTGCAGGGTACCGGTGTGAGCTACCAGAACCAAGGCAACCAAGt                                                                                                                   >  1:20031/1‑148 (MQ=255)                                     gCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTc                                                                                                                  <  1:247592/148‑1 (MQ=255)                                      cAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCAc                                                                                                                >  4:224731/1‑149 (MQ=255)                                       aaTCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCAc                                                                                                                >  7:308362/1‑148 (MQ=255)                                         tCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCa                                                                                                              <  1:264592/148‑1 (MQ=255)                                           gAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATc                                                                                                            >  3:117078/1‑148 (MQ=255)                                            aaCCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCca                                                                                                          >  5:212760/1‑149 (MQ=255)                                             aCCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCca                                                                                                          >  2:305200/1‑148 (MQ=255)                                              ccTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTc                                                                                                                  >  6:4533/1‑139 (MQ=255)                                              ccTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTc                                                                                                                  <  5:4533/139‑1 (MQ=255)                                              ccTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCcaca                                                                                                        <  3:5049/149‑1 (MQ=255)                                               cTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCacac                                                                                                       <  8:61575/149‑1 (MQ=255)                                                tGCAGGTGCTATATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACAcc                                                                                                      >  5:139624/1‑149 (MQ=255)                                                           tataGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAgggggg                                                                                           >  7:29931/1‑149 (MQ=255)                                                           tataGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAgggggg                                                                                           >  5:208739/1‑149 (MQ=255)                                                                c‑ccACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCCCCCCCGCCATGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCCCt                                                                                       >  4:209709/1‑148 (MQ=255)                                                                   cacaGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCg                                                                                    <  8:29931/149‑1 (MQ=255)                                                                      aGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTg                                                                                 <  2:75017/149‑1 (MQ=255)                                                                           gTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACt                                                                            >  3:201341/1‑149 (MQ=255)                                                                             ggAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTg                                                                          >  8:95587/1‑149 (MQ=255)                                                                             ggAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTg                                                                          <  6:53618/149‑1 (MQ=255)                                                                              gAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTgg                                                                         <  6:139624/149‑1 (MQ=255)                                                                               aaGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGTGCCCGCCGCGGGCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCATCCAAGTCTCCATCCACAGCCGGGAGGGGGGCGCTGCGGTGGAACTTggg                                                                        <  3:209709/149‑1 (MQ=255)                                                                               aaGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTggg                                                                        <  6:212760/149‑1 (MQ=255)                                                                               aaGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTgg                                                                         <  6:208739/148‑1 (MQ=255)                                                                                    aaGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGcaac                                                                   <  3:224731/149‑1 (MQ=255)                                                                                    aaGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGcaac                                                                   <  4:117078/149‑1 (MQ=255)                                                                                     aGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAggggg                                                                                            >  1:132078/1‑123 (MQ=255)                                                                                          agcagcGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTCTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACAt                                                             >  5:97904/1‑149 (MQ=255)                                                                                              gcgcACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGTTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGAt                                                         <  2:278565/149‑1 (MQ=255)                                                                                                gcACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTaccggtcagtgcgctgctgcgcttgccttccacgtcctgtgggctatagagcacctgcaggttcgattgcgagccgaaggccaacaaggcgctg                                                        >  3:145648‑M2/1‑54 (MQ=255)                                                                                                   cTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGt                                                      >  1:48087/1‑147 (MQ=255)                                                                                                    tGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTaccggtcagtgcgctgctgcgcttgccttccacgtcctgtgggctatagagcacctgcaggttcgattgcgagccgaaggccaacaaggcgctggccag                                                   <  1:83632‑M2/149‑100 (MQ=255)                                                                                                    tGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAg                                                   >  6:124591/1‑149 (MQ=255)                                                                                                      aCCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGCTCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACGTGGGGCAACCAACATCGATGGTAAggg                                                 >  6:327467/1‑149 (MQ=255)                                                                                                      aCCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAggg                                                 <  8:308362/149‑1 (MQ=255)                                                                                                                tGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCaa                                       <  7:95587/149‑1 (MQ=255)                                                                                                                 ggAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCaaa                                      >  7:141488/1‑149 (MQ=255)                                                                                                                     cccGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAaccac                                  >  8:37361/1‑149 (MQ=255)                                                                                                                      ccgccgCGGCCCTGTCGCGGCTGCTGCAGGGTaccggtcagtgcgctgctgcgcttgccttccacgtcctgtgggctatagagcacctgcaggttcgattgcgagccgaaggccaacaaggcgctggccagcggctgggccggcacgtt                                 >  2:83632‑M2/1‑32 (MQ=255)                                                                                                                      ccgccgCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAaccacc                                 >  2:19377/1‑149 (MQ=255)                                                                                                                      ccgccgCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAaccacc                                 >  7:44163/1‑149 (MQ=255)                                                                                                                       cgccgcGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAAACAAGTCACAATCCCCACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCACCCAACATCGATGGTAAGGGTTTGGGGCAAtccacag                                >  6:181842/1‑147 (MQ=255)                                                                                                                        gccgcGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGCCCCAAacccttac                               <  1:305200/149‑6 (MQ=255)                                                                                                                                   gTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAACCACCGAGAACACCGGt                     >  4:292935/1‑148 (MQ=255)                                                                                                                                                     tACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAACCACCGAGAACACCGGTTCCTATACCACCGgcagca  >  7:183600/1‑149 (MQ=255)                                                                                                                                                     tACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAACCACCGAGAACACCGGTTCCTATACCACCGgcagca  >  7:178847/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCAGCCGCTGGCCAGCGCCTTGTTGGCCTTCGGCTCGCAATCGAACCTGCAGGTGCTCTATAGC‑CCACAGGACGTGGAAGGCAAGCGCAGCAGCGCACTGACCGGTGCAATGGAGCCCGCCGCGGCCCTGTCGCGGCTGCTGCAGGGTACCGGTGTGAGCTACCAGATCCAAGGCAACCAAGTCACCATCCACACCCGGGAGGGGGGCGCTGCGGTGGAACTTGGGGCAACCAACATCGATGGTAAGGGTTTGGGGCAAACCACCGAGAACACCGGTTCCTATACCACCGGCAGCA  >  NC_002947/4765488‑4765783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.