New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4828483	42 (0.810)	3 (0.060)	3/246	NT	6.2%	coding (2707/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	= 4828510	51 (1.040)					coding (2680/12954 nt)	pvdL	non‑ribosomal peptide synthetase

CACGCCGACGCGGATATCGGCCTGGCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGC  >  NC_002947/4828367‑4828652                                                                                                                                                |                                                                                                                                               cACGCCGACGCGGATATCGGCCTGGCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTgaagc                                                                                                                                           >  1:240616‑M2/1‑144 (MQ=255) cACGCCGACGCGGATATCGGCCTGGCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTgaagc                                                                                                                                           >  7:195560‑M2/1‑144 (MQ=255)     ccGACGCGGATATCGGCCTGGCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAgcgcgc                                                                                                                                       <  7:191265/149‑1 (MQ=255)          gcgGATATCGGCCTGGCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGgcgc                                                                                                                                  >  7:114733/1‑149 (MQ=255)            ggATATCGGCCTGGCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCtg                                                                                                                                >  3:297260/1‑149 (MQ=255)                         gCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCgctg                                                                                                                     <  8:142842/147‑1 (MQ=255)                           cACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAATGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCgctggctg                                                                                                                 >  5:217408/1‑149 (MQ=255)                              tGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGgcg                                                                                                              >  1:11262/1‑149 (MQ=255)                                 aGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGgcgcgc                                                                                                           >  3:163501/1‑149 (MQ=255)                                 aGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGgcgcgc                                                                                                           >  6:143971/1‑149 (MQ=255)                                  gcgcTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGgcgcgc                                                                                                           <  3:154054/148‑1 (MQ=255)                                            agcGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGt                                                                                                <  4:297260/149‑1 (MQ=255)                                               gcCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGca                                                                                             <  7:42464/149‑1 (MQ=255)                                                ccTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGcac                                                                                            <  8:192855/149‑1 (MQ=255)                                                 cTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGcaca                                                                                           <  5:239775/149‑1 (MQ=255)                                                 cTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCATGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGcaca                                                                                           <  5:106784/149‑1 (MQ=255)                                                   gCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGggtggt                                                                                                    >  6:241533/1‑138 (MQ=255)                                                   gCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGggtggt                                                                                                    <  5:241533/138‑1 (MQ=255)                                                    ccAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGt                                                                                        >  3:90441/1‑149 (MQ=255)                                                     cAACCGGCCAGCAGGAGCACGAACTGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTc                                                                                       <  4:99328/149‑1 (MQ=255)                                                      aaCCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTc                                                                                       >  5:141745/1‑148 (MQ=255)                                                            ccAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGcc                                                                                <  4:163501/149‑1 (MQ=255)                                                              agcagGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCgg                                                                              >  7:191021/1‑149 (MQ=255)                                                                        tGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTcacca                                                                    >  5:144269/1‑149 (MQ=255)                                                                             aGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAg                                                               <  2:11262/149‑1 (MQ=255)                                                                              ggCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTAGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAgg                                                              >  5:175363/1‑149 (MQ=255)                                                                                 tGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAg                                                               <  1:208293/145‑1 (MQ=255)                                                                                 tGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAg                                                               >  2:208293/1‑145 (MQ=255)                                                                                 tGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGAGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGGCAGGGAACAGGACGCGCCCGGGCCGCACAccaccagcgggg                                                           >  8:46992/1‑143 (MQ=255)                                                                                   gCCTGCTGCTGGTGGGCAATGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGgtgt                                                           <  6:217408/147‑1 (MQ=255)                                                                                     ctgctgctgGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCt                                                       <  3:235756/149‑1 (MQ=255)                                                                                        ctgctgGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTAGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTc                                                     <  6:175363/148‑1 (MQ=255)                                                                                                 ggCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGc                                            >  6:110031/1‑148 (MQ=255)                                                                                                   cAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCtt                                                      >  3:273673/1‑136 (MQ=255)                                                                                                   cAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCtt                                                      <  4:273673/136‑1 (MQ=255)                                                                                                      ggCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTgg                                      <  6:141745/149‑1 (MQ=255)                                                                                                         ccTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTcac                                                                      <  7:124963/114‑1 (MQ=255)                                                                                                         ccTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTcac                                                                      >  8:124963/1‑114 (MQ=255)                                                                                                             gAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTc                                 <  8:114733/147‑1 (MQ=255)                                                                                                               gcgcTTCGCCAAGCCTGACTGGCACCTTGAGGCTgaagcgctcaagggccttgcccaccagcagcaggccagcctgttcatggtcctgctggccggttggcaggcgctgctgcagcgctacagtggccaggccgatatccgc                                    <  8:126906‑M2/142‑109 (MQ=255)                                                                                                               gcgcTTCGCCAAGCCTGACTGGCACCTTGAGGCTgaagcgctcaagggccttgcccaccagcagcaggccagcctgttcatggtcctgctggccggttggcaggcgctgctgcagcgctacagtggccaggccgatatccgc                                    >  7:126906‑M2/1‑34 (MQ=255)                                                                                                               gcgcTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCt                             <  4:90441/149‑1 (MQ=255)                                                                                                                  cTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCa                          >  4:248778/1‑149 (MQ=255)                                                                                                                   ttCGCCAAGCCTGACTGGCACCTTGAGGCTgaagcgctcaagggccttgcccaccagcagcaggccagcctgttcatggtcctgctggccggttggcaggcgctgctgcagcgctacagtggcaaggccgatatccgcgtcggcgtgcc                         <  7:200502‑M2/149‑120 (MQ=255)                                                                                                                       ccAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGt                      >  5:153012/1‑148 (MQ=255)                                                                                                                        cAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACTGTca                    <  2:3439/149‑1 (MQ=255)                                                                                                                        cAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGt                      >  8:118046/1‑147 (MQ=255)                                                                                                                        cAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGt                      >  4:286489/1‑147 (MQ=255)                                                                                                                             cTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTcagccag               >  5:145557/1‑149 (MQ=255)                                                                                                                                aCTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTcagccagc              <  7:236023/147‑1 (MQ=255)                                                                                                                                aCTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAgccagcca            >  5:324396/1‑149 (MQ=255)                                                                                                                                    gCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGggtg                                                                                                      <  5:241824/55‑1 (MQ=255)                                                                                                                                    gCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGggtg                                                                                                      >  6:241824/1‑55 (MQ=255)                                                                                                                                     cACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGc                                                                          <  4:194451/82‑1 (MQ=255)                                                                                                                                     cACCTTGACGCTCAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGCGTGCTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTCTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGcc       >  2:156890/1‑149 (MQ=255)                                                                                                                                      aCCTTGAGGCTGAAGCGCGCGGTGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCg      >  5:200712/1‑149 (MQ=255)                                                                                                                                           gAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGc  <  6:144269/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               CACGCCGACGCGGATATCGGCCTGGCCACTGTAGCGCTGCAGCAGCGCCTGCCAACCGGCCAGCAGGACCATGAACAGGCTGGCCTGCTGCTGGTGGGCAAGGCCCTTGAGCGCTTCGCCAAGCCTGACTGGCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGC  >  NC_002947/4828367‑4828652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.