New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5499268	49 (0.950)	5 (0.100)	4/242	NT	11.2%	coding (46/720 nt)	cobK	precorrin‑6x reductase
	?	NC_002947	= 5499329	34 (0.710)					coding (107/720 nt)	cobK	precorrin‑6x reductase

ATCGACCGCCAAGGCGGCATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCA  >  NC_002947/5499182‑5499477                                                                                                                                                    |                                                                                                                                                     aTCGACCGCCAAGGCGGCATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCc                                                                                                                                                     <  1:87550‑M2/149‑2 (MQ=255)    gACCGCCAAGGCGGCATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCccag                                                                                                                                                  <  8:245482‑M2/149‑5 (MQ=255)     aCCGCCAAGGCGGCATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCccagg                                                                                                                                                 >  4:178048‑M2/1‑144 (MQ=255)     aCCGCCAAGGCGGCATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCccagg                                                                                                                                                 >  7:278309‑M2/1‑144 (MQ=255)          cAAGGCGGCATCGTCGGCCAGGCGGGGGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGTGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTg                                                                                                                                            <  3:234890/149‑1 (MQ=255)              gcggcATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAAt                                                                                                                                        <  7:245482/149‑1 (MQ=255)                 gcATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGcc                                                                                                                                     <  3:64298/149‑1 (MQ=255)                   aTCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAg                                                                                                                                   <  2:87550/149‑1 (MQ=255)                         ggCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCgg                                                                                                                             <  4:178041/149‑1 (MQ=255)                               gCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCggg                                                                                                                       <  2:88903/149‑1 (MQ=255)                                   gtgtGCAATGACTGCGCCCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCt                                                                                                                   <  3:191972/149‑1 (MQ=255)                                        cAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGc                                                                                                              >  6:75302/1‑149 (MQ=255)                                        cAATAACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGc                                                                                                              >  6:19719/1‑149 (MQ=255)                                                    gcATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGc                                                                                                  >  5:114473/1‑149 (MQ=255)                                                    gcATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGc                                                                                                  >  5:208440/1‑149 (MQ=255)                                                      aTCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGc                                                                                                              <  7:218170/135‑1 (MQ=255)                                                      aTCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGc                                                                                                              >  8:218170/1‑135 (MQ=255)                                                      aTCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCt                                                                                                >  3:238203/1‑149 (MQ=255)                                                         cTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGAc                                                                                             <  4:218470/149‑1 (MQ=255)                                                                         tCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGcgcg                                                                               >  7:145162/1‑147 (MQ=255)                                                                         tCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGaa                                                                             <  6:114473/149‑1 (MQ=255)                                                                             tGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCccagggcttcagtgacccctcccagcaacaggatgcgcgcagtcattgcacacccgcctggccgacgatgccgcctt                                                                         <  2:183972‑M2/149‑78 (MQ=255)                                                                             tGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGATATCGGCCGCGTGCCccagggcttcagtgacccctcccagcaacaggatgcgcgcagtcattgcacacccgcctggccgacgatgccgcctt                                                                         <  7:258809‑M2/149‑78 (MQ=255)                                                                               aaGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGc                                                                       <  8:145162/149‑1 (MQ=255)                                                                                 gCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCccagggcttcagtgacccctcccagcaacaggatgcgcgcagtcattgcacacccgcctggccgacgatgccgccttggcg                                                                     <  1:262066‑M2/149‑82 (MQ=255)                                                                                               ccGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGc                                                                       <  4:108518/133‑1 (MQ=255)                                                                                               ccGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGc                                                                       >  3:108518/1‑133 (MQ=255)                                                                                                cGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCg                                                                                                       >  8:96413/1‑100 (MQ=255)                                                                                                cGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCg                                                                                                       <  7:96413/100‑1 (MQ=255)                                                                                                 gCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGAc                                                     <  6:208440/149‑1 (MQ=255)                                                                                                                gACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCGCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGTAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTa                                       <  4:238203/148‑1 (MQ=255)                                                                                                                  cATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCccagggcttcagtgacccctcccagcaacaggatgcgcgcagtcattgcacacccgcctggccgacgatgccgccttggcggtcgatggcgaacacttccacgtgcacctgcgc                                    >  2:262066‑M2/1‑35 (MQ=255)                                                                                                                      tCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCcgcg                                >  1:320070/1‑149 (MQ=255)                                                                                                                        tACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCCCCCCTATGCCgcgc                               >  8:167657/1‑148 (MQ=255)                                                                                                                        tACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCgcgc                               >  3:99022/1‑148 (MQ=255)                                                                                                                        tACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCgcgc                               >  1:269856/1‑148 (MQ=255)                                                                                                                           aGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAAt                           >  1:24752/1‑149 (MQ=255)                                                                                                                                 gCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCg                     <  5:75302/149‑1 (MQ=255)                                                                                                                                        tCGGCCGCGTGCCccagggcttcagtgacccctcccagcaacaggatgcgcgcagtcattgcacacccgcctggccgacgatgccgccttggcggtcgatggcgaacacttccacgtgcacctgcgccggcacgacgctacgggcgaa               >  8:258809‑M2/1‑13 (MQ=255)                                                                                                                                        tCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATgcc              >  5:191903/1‑149 (MQ=255)                                                                                                                                           gCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATgccgc            >  7:4878/1‑148 (MQ=255)                                                                                                                                           gCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATgccgc            >  8:254497/1‑148 (MQ=255)                                                                                                                                             cgcgTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAg         >  3:106388/1‑149 (MQ=255)                                                                                                                                              gcgTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAgc        >  7:26682/1‑149 (MQ=255)                                                                                                                                              gcgTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAgc        >  8:243630/1‑149 (MQ=255)                                                                                                                                                  gCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGGCGAGGGCTTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGcgccg    <  5:19719/149‑1 (MQ=255)                                                                                                                                                    cccAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGccaccca                                             >  1:319800/1‑106 (MQ=255)                                                                                                                                                    cccAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGccaccca                                             <  2:319800/106‑1 (MQ=255)                                                                                                                                                    cccAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCcgca  <  2:24752/149‑1 (MQ=255)                                                                                                                                                    cccAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCcgca  >  4:28089/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ATCGACCGCCAAGGCGGCATCGTCGGCCAGGCGGGTGTGCAATGACTGCGCGCATCCTGTTGCTGGGAGGGGTCACTGAAGCCCTGGCGATGGCCCGCCAACTCGGGCCTCGACATGTCTACAGCCTGGCCGGTATCGGCCGCGTGCCCCAGGGCTTGCAATGCCAGGTGCGGGTCGGGGGCTATGGCGGTGTCGAGGGCCTGACCCGTTACCTGCGCGAAGCGGGCATCACCCTGCTGATCGACGCCACCCACCCCTATGCCGCGCAAATCAGCCGCAATGCCGCCAGCGCCGCA  >  NC_002947/5499182‑5499477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.