New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5923411	46 (0.890)	3 (0.060)	3/246	NT	6.3%	coding (1020/2874 nt)	gcvP‑II	glycine dehydrogenase
	?	NC_002947	= 5923437	45 (0.920)					coding (994/2874 nt)	gcvP‑II	glycine dehydrogenase

TGATGCCTTTGGCCTCAAGGCCGGCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGACAGGCGAAATAGGCCGCGTGA  >  NC_002947/5923290‑5923585                                                                                                                                                    |                                                                                                                                                     tGATGCCTTTGGCCTCAAGGCCGGCTGCCAGGATGAAGGTCAACCTGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGa                                                                                                                                                      <  4:217470/148‑1 (MQ=255)     gCCTTTGGCCTCAAGGCCGGCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAgttgg                                                                                                                                                 <  8:261847‑M2/149‑6 (MQ=255)     gCCTTTGGCCTCAAGGCCGGCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAgttgg                                                                                                                                                 <  4:258127‑M2/149‑6 (MQ=255)            gCCTCAAGGCCGGCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTc                                                                                                                                          >  2:128858/1‑149 (MQ=255)               tCAAGGCCGGCTGCCAGGATGAAGGTCAACGGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTcgcg                                                                                                                                       >  1:30857/1‑149 (MQ=255)                 aaGGCCGGCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCgcggc                                                                                                                                     >  1:171398/1‑149 (MQ=255)                   ggCCGGCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCgcggcg                                                                                                                                    >  2:312899/1‑148 (MQ=255)                        gCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGGAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATAtg                                                                                                                              <  3:306607/149‑1 (MQ=255)                            ccAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATAtgctgc                                                                                                                          <  1:312899/149‑1 (MQ=255)                            ccAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATAtgctg                                                                                                                           <  4:18775/148‑1 (MQ=255)                              aGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTc                                                                                                                        >  5:9859/1‑149 (MQ=255)                                   gAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCgg                                                                                                                    <  5:167925/148‑1 (MQ=255)                                     aGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTcgcg                                                                                                                                       <  1:207108/127‑1 (MQ=255)                                     aGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTcgcg                                                                                                                                       >  2:207108/1‑127 (MQ=255)                                          aaCCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATTTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAg                                                                                                            <  8:28577/149‑1 (MQ=255)                                          aaCCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAg                                                                                                            >  4:86471/1‑149 (MQ=255)                                             cGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGc                                                                                                         <  7:261847/149‑1 (MQ=255)                                             cGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGc                                                                                                         <  3:258127/149‑1 (MQ=255)                                                tGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCAt                                                                                                      <  2:171398/149‑1 (MQ=255)                                                  cacaCGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTTCAGGGCCATcc                                                                                                    <  1:128858/149‑1 (MQ=255)                                                                   gTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCa                                                                                   <  6:9859/149‑1 (MQ=255)                                                                      gCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACgg                                                                                >  1:37330/1‑149 (MQ=255)                                                                       cAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACgg                                                                                <  2:37330/148‑1 (MQ=255)                                                                        aGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACggg                                                                               >  3:317548/1‑148 (MQ=255)                                                                          gCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCAt                                                                            >  6:18241/1‑149 (MQ=255)                                                                          gCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCAt                                                                            <  6:144552/149‑1 (MQ=255)                                                                                 gggCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGtt                                                                                       <  8:152748/131‑1 (MQ=255)                                                                                 gggCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGGTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGtt                                                                                       >  7:152748/1‑131 (MQ=255)                                                                                  ggCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGa                                                                     >  3:119586/1‑148 (MQ=255)                                                                                   gCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTg                                                                                                               <  4:255206/105‑1 (MQ=255)                                                                                   gCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTg                                                                                                               >  3:255206/1‑105 (MQ=255)                                                                                           acacCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCgcggc                                                                                                                                     >  5:245179/1‑75 (MQ=255)                                                                                           acacCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCgcggc                                                                                                                                     <  6:245179/75‑1 (MQ=255)                                                                                           acacCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGc                                                                <  8:135387/144‑1 (MQ=255)                                                                                           acacCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGc                                                                >  7:135387/1‑144 (MQ=255)                                                                                              ccGCGTAGAAGCCGGCAATGTTGTCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGatgatg                                                        <  7:280759/149‑1 (MQ=255)                                                                                                 cgTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATgcgc                                                     <  5:18241/149‑1 (MQ=255)                                                                                                      aaGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCgg                                                >  4:315670/1‑149 (MQ=255)                                                                                                      aaGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCgg                                                <  3:315670/149‑1 (MQ=255)                                                                                                           ggCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAgttggccaacattgccggcttctacgcggtgtaccacggcccggaaggcctgcaacgcatcgcgcagcgtgtgcaccggttgaccttcatcctggcagccggccttg                                           <  6:230906‑M2/149‑108 (MQ=255)                                                                                                             cAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCt                                         >  1:195797/1‑149 (MQ=255)                                                                                                              aaTGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAgttggccaacattgccggcttctacgcggtgtaccacggcccggaaggcctgcaacgcatcgcgcagcgtgtgcaccggttgaccttcatcctggcagccggccttgagg                                        >  5:230906‑M2/1‑39 (MQ=255)                                                                                                                  ttGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAgttggccaacattgccggcttctacgcggtgtaccacggcccggaaggcctgcaacgcatcgcgcagcgtgtgcaccggttgaccttcatcctggcagccggccttgaggcca                                     <  3:16058‑M2/148‑114 (MQ=255)                                                                                                                           aGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAgtcgtc                           <  3:86471/149‑1 (MQ=255)                                                                                                                             cACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTcgc                         <  6:66514/149‑1 (MQ=255)                                                                                                                                cTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGa                       >  2:70796/1‑148 (MQ=255)                                                                                                                                cTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGa                       >  3:12348/1‑148 (MQ=255)                                                                                                                                 tGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGa                       >  7:217844/1‑147 (MQ=255)                                                                                                                                         gCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGGCGTCGCGACAGGCGAAAt             <  1:70796/149‑1 (MQ=255)                                                                                                                                          cAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGACAGGCGaaa              >  4:201963/1‑147 (MQ=255)                                                                                                                                          cAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGACAGGCGAAATa            <  2:30857/149‑1 (MQ=255)                                                                                                                                               gTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGACAGGCGAAATAGGCcg       >  2:95117/1‑149 (MQ=255)                                                                                                                                                    aGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGACAGGCGAAATAGGCCGCGTGa  <  4:317548/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGATGCCTTTGGCCTCAAGGCCGGCTGCCAGGATGAAGGTCAACCGGTGCACACGCTGCGCGATGCGTTGCAGGCCTTCCGGGCCGTGGTACACCGCGTAGAAGCCGGCAATGTTGGCCAACAGCACCTGGGCCGTGCAGATGTTGGAGTTGGCCTTTTCGCGGCGAATATGCTGCTCGCGGGTTTGCAGGGCCATCCGTAATGCGGTGTTGCCACGGGCATCGCGCGATACGCCGATGATGCGCCCCGGCATGGCTCGCTTGTAGTCGTCGCGACAGGCGAAATAGGCCGCGTGA  >  NC_002947/5923290‑5923585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.