| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 139294 = | 53 (0.940) | 3 (0.060) | 3/248 | NT | 5.8% | coding (1210/1782 nt) | kinB | alginate biosynthesis sensor protein KinB |
| ? | NC_002947 | 139339 = | 46 (0.850) | coding (1165/1782 nt) | kinB | alginate biosynthesis sensor protein KinB | |||||
TCCTCGGCGCGGTGATGGTGCTGCACGATGTGACCGAGCAAAGGGCCTTCGAGCGGGTGCGCAGCGAATTCGTGCTGCGCGCCTCCCACGAACTGCGTACCCCGGTGACCGGCATGCACATGGCCTTCGGCCTGCTGCGCGAGCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/139443‑139294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaCCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGGCTGTAGGTGA > NC_002947/139339‑139485 TCCTCGGCGCGGTGATGGTGCTGCACGATGTGACCGAGCAAAGGGCCTTCGAGCGGGTGCGCAGCGAATTCGTGCTGCGCGCCTCCCACGAACTGCGTACCCCGGTGACCGGCATGCACATGGCCTTCGGCCTGCTGCGCGAGCGGGT > 8:166015/1‑148 CGGTGACCGGCATGCACATGGCCTTCGGCCTGCTGCGCGAGCGGGTCACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCC > 8:183524/1‑148 CGGCATGCACATGGCCTTCGGCCTGCTGCGCGAGCGGGTCACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAG > 1:215686/1‑144 CGGCATGCACATGGCCTTCGGCCTGCTGCGCGAGCGGGTCACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAG < 2:215686/144‑1 GGTCACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGGCTGTAGG > 2:228210/1‑149 GTCACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGGCTGTAGGT < 5:20682/149‑1 GTCACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGGCTGTAGGT < 6:257121/149‑1 GTCACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGGCTGTAGGT > 7:49451/1‑149 ACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGGCTGTAGGTGA < 5:272727/148‑1 ACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCATGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGG < 3:311544/138‑1 ACCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCATGCAGCACCAACACCGCGCCGAGGATTGGTCACAGCGGGTGGCTGACCGGGGTCAGG > 4:311544/1‑138 TCCTCGGCGCGGTGATGGTGCTGCACGATGTGACCGAGCAAAGGGCCTTCGAGCGGGTGCGCAGCGAATTCGTGCTGCGCGCCTCCCACGAACTGCGTACCCCGGTGACCGGCATGCACATGGCCTTCGGCCTGCTGCGCGAGCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/139443‑139294‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcaCCGGGGTACGCAGTTCGTGGGAGGCGCGCAGCACGAATTCGCTGCGCACCCGCTCGAAGGCCCTTTGCTCGGTCACATCGTGCAGCACCATCACCGCGCCGAGGATTGGTCCCTGCGGGTGGCTGACCGGGGTCAGGCTGTAGGTGA > NC_002947/139339‑139485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |