New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 674330	46 (0.810)	3 (0.060)	3/240	NT	6.9%	intergenic (‑222/+84)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	= 674353	38 (0.720)					intergenic (‑245/+61)	PP_0575/PP_0576	membrane protein/lipoprotein

GACGGGAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/674177‑674330 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagcAATTGGCCCGGTGCATGGCACCGGCTTCGCGGATGTTCGCGGGTGACCCCACGCCTACATAGATGGCGATTACGAGTACGACTGCGTCACCGGCCTGGCCTGT  <  NC_002947/674353‑674251                                                                                                                                                                                                                                                                   GACGGGAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGC                                                                                                              <  7:35453/149‑1    GGGAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCAATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAA                                                                                                           >  7:304405/1‑149      GAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGC                                                                                                         <  4:51635/149‑1                                    AAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCAATTGGCCCGGTGCATGGCACCGGCTTCGC                                                                           <  3:234704/149‑1                                       AAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCAATTGGCCCGGTGCATGGCACCGGCTTCGCGGA                                                                        <  4:93078/149‑1                                        AAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCTGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGCAATTGGCCCGGTGCATGGCACCGGCTTCGCGGAT                                                                       <  8:302819/149‑1                                                                       TGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCC                                                                                                                >  5:274461/1‑77                                                                       TGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCC                                                                                                                <  6:274461/77‑1                                                                                                                                                   CGCGAAGCAATTGGCCCGGTGCATGGCACCGGCTTCGCGGATGTTCGCGGGTGACCCCACGCCTACATAGATGGCGATTACGAGTACGACTGCGTCACCGGCCTGGCCTGT  <  7:139382/111‑1                                                                                                                                                   CGCGAAGCAATTGGCCCGGTGCATGGCACCGGCTTCGCGGATGTTCGCGGGTGACCCCACGCCTACATAGATGGCGATTACGAGTACGACTGCGTCACCGGCCTGGCCTGT  >  8:139382/1‑111                                                                                                                                                                                                                                                                   GACGGGAACGTGCGGGGGAGTGCGGTTGGCATCGGAAAAAAGGCGTGCGTGGAATGGATTTTGTCGTAGCTGACACAGGCCAGGCCGGTGACGCAGTCGTACTCGTAATCGCCATCTATGTAGGCGTGGGGTCACCCGCGAACATCCGCGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/674177‑674330 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaagcAATTGGCCCGGTGCATGGCACCGGCTTCGCGGATGTTCGCGGGTGACCCCACGCCTACATAGATGGCGATTACGAGTACGACTGCGTCACCGGCCTGGCCTGT  <  NC_002947/674353‑674251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.