New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	738599 =	40 (0.710)	4 (0.080)	4/234	NT	11.4%	coding (817/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	738653 =	26 (0.510)					coding (763/867 nt)	pilD	leader peptidase/N‑methyltransferase

GCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCGCTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/738755‑738599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggattgccgtgcCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGAT  >  NC_002947/738653‑738761                                                                                                                                                                                                                                                                            GCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCGCTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCTCGTTTGGCCGTTATCTGGCAATTGCGGGGTGGAT                                                                                                                       >  5:192864/1‑149  CGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCGCTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATT                                                                                                                      >  8:62644/1‑149      GGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCGCTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCG                                                                                                                  >  6:139503/1‑149                               ACGCTGCTGTTGTCGTCGGTGGTGGGGGCGCTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCG                                                                                                                  <  1:212043/124‑1                               ACGCTGCTGTTGTCGTCGGTGGTGGGGGCGCTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCG                                                                                                                  >  2:212043/1‑124                                                                                                          ACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCC              >  6:306295/1‑149                                                                                                           CGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCCCATGGCATCCCGGCGAAAACACAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACTGCA                              <  2:43445/132‑1                                                                                                           CGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCCCATGGCATCCCGGCGAAAACACAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACCGCA                              >  1:43445/1‑132                                                                                                                      TTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGAT  <  5:306295/149‑1                                                                                                                                                                                                                                                                            GCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCGCTGTTTGGCCTGTGCCTGCTGCGTTTTCGCCGGGATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGCGGGGTGGATTGCCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/738755‑738599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggattgccgtgcCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGCCAACCCCCCCACGCCCCGAT  >  NC_002947/738653‑738761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.