New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	738599 =	40 (0.710)	4 (0.080)	4/234	NT	11.4%	coding (817/867 nt)	pilD	leader peptidase/N‑methyltransferase
	?	NC_002947	738653 =	26 (0.510)					coding (763/867 nt)	pilD	leader peptidase/N‑methyltransferase

GCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGC  >  NC_002947/738454‑738741                                                                                                                                                  |                                                                                                                                               gCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCAc                                                                                                                                             >  6:99287/1‑149 (MQ=255)   cAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCAGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACgg                                                                                                                                           >  2:71116/1‑149 (MQ=255)        tCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATc                                                                                                                                      >  2:272852/1‑149 (MQ=255)              aaGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCAcccc                                                                                                                                <  6:289421/149‑1 (MQ=255)               aGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCg                                                                                                                               >  2:339067/1‑149 (MQ=255)                            ggcgCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGAt                                                                                                                   >  7:221203/1‑148 (MQ=255)                                  tttACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGc                                                                                                             >  5:139503/1‑148 (MQ=255)                                     atcggggcgtgggggggttggcaggtgctgccgttgacgctgctgttgtcgtcggtggtgggggcgctgtttggcctgtgcctgctgcgttttcgccgggatgccatggGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCaaa                                                                                                         <  5:306295‑M1/40‑1 (MQ=255)                                         cTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGcc                                                                                                            <  3:178769/142‑1 (MQ=255)                                         cTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGcc                                                                                                            >  4:178769/1‑142 (MQ=255)                                         cTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACggg                                                                                                     <  1:349235/149‑1 (MQ=255)                                         cTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACggg                                                                                                     <  6:148818/149‑1 (MQ=255)                                         cTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACgg                                                                                                      >  3:304519/1‑148 (MQ=255)                                            ccAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGa                                                                                                    <  5:99287/147‑1 (MQ=255)                                             cAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTg                                                                                                 >  3:119622/1‑149 (MQ=255)                                                 gggggttggcaggtgctgccgttgacgctgctgttgtcgtcggtggtgggggcgctgtttggcctgtgcctgctgcgttttcgccgggatgccatggGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGt                                                                                             >  6:306295‑M1/98‑149 (MQ=255)                                                  ccgccgGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTg                                                                                            <  4:304519/149‑1 (MQ=255)                                                    gccgGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGGAGTGGTCCTCAGCATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGcc                                                                                          <  1:301114/149‑1 (MQ=255)                                                     ccgGGCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGccc                                                                                         <  5:47096/149‑1 (MQ=255)                                                        gTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATg                                                                                      <  3:67210/149‑1 (MQ=255)                                                            ggCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCAt                                                                                  <  1:272852/149‑1 (MQ=255)                                                             gCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATc                                                                                 >  1:309761/1‑149 (MQ=255)                                                               cGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATccc                                                                               >  8:102393/1‑149 (MQ=255)                                                                gagaATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCCCCCCGCACATGCCAGATAAGGGCCAAACGGGATTGCCGTGACCATGGCATCCCg                                                                              >  8:232502/1‑149 (MQ=255)                                                                 tgcggttgacgctgctgttgtcgtcggtggtgggggcgctgtttggcctgtgcctgctgtgttttcgccgggatgccatggGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCg                                                                                              >  1:43445‑M1/82‑132 (MQ=255)                                                                 tgcagttgacgctgctgttgtcgtcggtggtgggggcgctgtttggcctgtgcctgctgtgttttcgccgggatgccatggGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCg                                                                                              <  2:43445‑M1/51‑1 (MQ=255)                                                                       cAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGaaaa                                                                       <  7:64687/149‑1 (MQ=255)                                                                       cAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGaaaa                                                                       >  8:59600/1‑149 (MQ=255)                                                                                     cGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAg                                                         <  1:339067/149‑1 (MQ=255)                                                                                            gTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCaaa                                                   <  7:102393/148‑1 (MQ=255)                                                                                               atcaGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAgc                                               >  7:62644/1‑149 (MQ=255)                                                                                                         aaGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGcccggccca                                     >  1:147079/1‑143 (MQ=255)                                                                                                             aGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACcga                                 <  7:59600/149‑1 (MQ=255)                                                                                                                  cATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAg                                                         >  6:312266/1‑120 (MQ=255)                                                                                                                  cATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCgacgac                             >  2:61257/1‑148 (MQ=255)                                                                                                                  cATGTATGAGGCCTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAg                                                         <  5:312266/120‑1 (MQ=255)                                                                                                                   aTGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCAACCCCGCAATTGCCAGATAAGGGCCAAACGAGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGAACAGGACAAACAGCGCCCCCACCTCCGACGacaa                           >  6:192864/1‑149 (MQ=255)                                                                                                                      tATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAACCAGCGCCACCAGCACCGACGACAAcag                        >  6:177872/1‑149 (MQ=255)                                                                                                                          aGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCGCACCACCGACCACAACcgcggc                    >  2:101734/1‑149 (MQ=255)                                                                                                                           ggCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCg                   <  1:71116/149‑1 (MQ=255)                                                                                                                                 tatTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAAc              <  1:61257/148‑1 (MQ=255)                                                                                                                                    ttCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCGATGGCATCCCGGCGCAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCATCGgc           <  7:232502/148‑1 (MQ=255)                                                                                                                                     tcatcaCCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGgca          <  4:119622/148‑1 (MQ=255)                                                                                                                                      catcaCCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGgcag         <  1:143321/148‑1 (MQ=255)                                                                                                                                            cccAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGc  <  2:21410/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               GCCAAGCTCGACAAAGCGCTCGGCAGCGGCGCTTTTACCGCTACCAATGCCGCCGGTCAGGCCGAGAATCCAGGGGGTAAAGGCCGCAGTGGTCATCAGTATCCAAGCAGTTGCATGTATGAGGCGTATATTTCATCACCCCAGAGCACGGCAATCCACCCCGCAATTGCCAGATAAGGGCCAAACGGGATTGCCGTGCCCATGGCATCCCGGCGAAAACGCAGCAGGCACAGGCCAAACAGCGCCCCCACCACCGACGACAACAGCAGCGTCAACGGCAGCACCTGC  >  NC_002947/738454‑738741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.