New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 769351	47 (0.830)	4 (0.080)	4/242	NT	9.2%	coding (1429/1440 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_002947	= 769381	35 (0.660)					intergenic (+19/‑27)	mmuP/PP_0661	S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR

TGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/769204‑769351 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttccgGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGG  <  NC_002947/769381‑769241                                                                                                                                                                                                                                                                                                    TGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCC                                                                                                                                                >  2:326548/1‑147                           TCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGGCTACCTGGCGTATTGGCTCACGTGCAAGTACCGCAGCCGCCGTCCGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCCCCGGCTCAGGCG                                                                                                                     >  1:73990/1‑149                                        CTGTACTTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGG                                                                                                       <  2:73990/149‑1                                            ACTTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG                                                                                                                                               <  1:86473/105‑1                                            ACTTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG                                                                                                                                               >  2:86473/1‑105                                              TTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGA                                                                                                             <  3:210321/137‑1                                              TTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGA                                                                                                             >  4:210321/1‑137                                                                                                                                              AGGTTCCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGG  >  3:171638/1‑149                                                                                                                                                   CCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATG                        <  3:150133/122‑1                                                                                                                                                   CCGGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATG                        >  4:150133/1‑122                                                                                                                                                                                                                                                                                                    TGCGTCGGCATTGCCTTCGACCCAGCTCAGCGGGTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGT‑GCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/769204‑769351 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttccgGTGGCCTAGTATCACCTGCTCAGGCGGCCTCGGAACCTGGGGCGACGATTTCCAGCGGGGCCGTACGGCGGCTGCGGTACTTGCACGTCAGCCAATAGGCCAGGTAGCACCAGGCAATGAAGGGCAAGCCGAAGTACAGGG  <  NC_002947/769381‑769241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.