New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 769351 | 47 (0.830) | 4 (0.080) | 4/242 | NT | 9.2% | coding (1429/1440 nt) | mmuP | S‑methyl‑L‑methionine transporter |
? | NC_002947 | = 769381 | 35 (0.660) | intergenic (+19/‑27) | mmuP/PP_0661 | S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR |
CCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGA > NC_002947/769241‑769522 | cccTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacct > 3:171638‑M2/1‑141 (MQ=255) cGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACga < 3:224472/147‑1 (MQ=255) ggCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGaa < 1:154049/149‑1 (MQ=255) ggCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGaa < 1:242433/149‑1 (MQ=255) ggCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGaa < 2:68724/149‑1 (MQ=255) cccTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAgccgcc > 3:302068/1‑149 (MQ=255) ccTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGc > 4:44324/1‑134 (MQ=255) ccTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGc < 3:44324/134‑1 (MQ=255) cTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTa < 4:238753/131‑1 (MQ=255) cTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTa > 3:238753/1‑131 (MQ=255) ttCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGAt > 6:202524/1‑149 (MQ=255) cATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcgg > 4:150133‑M2/1‑119 (MQ=255) cATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcgg < 3:150133‑M2/122‑4 (MQ=255) aTTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGAc > 4:179782/1‑149 (MQ=255) aCCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCa > 2:63063/1‑118 (MQ=255) ccTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCt < 1:210504/146‑1 (MQ=255) ccTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCt > 2:210504/1‑146 (MQ=255) aTTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTg > 1:144777/1‑140 (MQ=255) aTTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTg < 2:144777/140‑1 (MQ=255) gCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACt < 3:179782/149‑1 (MQ=255) tGACGTGCAAGTACCGGAGCCGCCGTACGGCCCCTCTGGAATTCGTCGCCCCTGGTTCCGAGGCCGCCTGAGCAGGTGATACTTGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGaa < 4:306013/127‑1 (MQ=255) tGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGaa > 3:306013/1‑127 (MQ=255) gACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGAAGACCCAGAAAACCATGCCCCCCCGGAACTGGc > 4:9886/1‑149 (MQ=255) gTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAACCCTTGCCCCCCGTGAACTgggt > 5:191048/1‑145 (MQ=255) gTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTgg < 5:109311/139‑1 (MQ=255) gTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTgg > 6:109311/1‑139 (MQ=255) ccGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTc > 7:19072/1‑148 (MQ=255) cgccgTACGGCCCCGCTGGAAATCGTCGCCCCCGGGTCCGCGGCCGCCTGCCCCGGTGATACTACGCCACCGGAACCTAGCCACGCGAAGCCGCCGCTGACCCCCCAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTc < 6:191048/149‑1 (MQ=255) cgTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGgc < 3:216979/149‑1 (MQ=255) cgtccgcGCTGGAATTCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGt < 3:9886/143‑1 (MQ=255) cTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGaa > 2:355404/1‑149 (MQ=255) ggAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACt > 6:161009/1‑149 (MQ=255) aTCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCAc < 8:19072/149‑1 (MQ=255) gtcgCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCa > 8:196068/1‑149 (MQ=255) tcgCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTAGAAGTGTCGGCGCGTTACTTGAACTTCACCCAt < 4:302068/149‑1 (MQ=255) ccAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtacttgcacgtcagccaataggccaggtagcaccaggcaatgaagggcaagccgaagtacag < 2:73990‑M2/149‑110 (MQ=255) tCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtacttgcacgtcagccaataggccaggtagcaccaggcaatgaagggcaagccgaa > 4:210321‑M2/1‑34 (MQ=255) tCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtacttgcacgtcagccaataggccaggtagcaccaggcaatgaagggcaagccgaa < 3:210321‑M2/137‑104 (MQ=255) gAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGACCCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGCGCt > 4:12559/1‑149 (MQ=255) gAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCt > 4:7687/1‑149 (MQ=255) cgccTGAGCCGGGGATACTAGGCCACcggaacctggggcgacgatttccagcggggccggacggcggctgcggtacttgcacgtgagccaatacgccaggtagccaccaggcaatgaagggcaagccgaagtacagggcaacccgctga > 1:73990‑M2/1‑26 (MQ=255) cgccTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGc > 5:143979/1‑146 (MQ=255) cgccTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGc < 6:143979/146‑1 (MQ=255) aGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTAccc < 5:161009/149‑1 (MQ=255) ggTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAgg < 5:202524/149‑1 (MQ=255) tAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGt > 2:160005/1‑147 (MQ=255) tAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGa < 7:209092/149‑1 (MQ=255) gCCACCGGAACCTAGCCACGAGAAGCCGCCGACGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAgggg < 7:177772/140‑1 (MQ=255) gCCACCGGAACCTAGCCACGAGAAGCCGCCGACGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAgggg > 8:177772/1‑140 (MQ=255) | CCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAATCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGA > NC_002947/769241‑769522 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |