New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1910312 | 34 (0.600) | 3 (0.060) | 3/244 | NT | 8.0% | coding (500/1341 nt) | PP_1710 | phthalate permease family MFS transporter |
? | NC_002947 | = 1910353 | 37 (0.690) | coding (459/1341 nt) | PP_1710 | phthalate permease family MFS transporter |
TTCCTTGCTTACCTTCTTGCAGTTCAGCGGGTCGCGGTACAGCACCAGCCACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1910161‑1910312 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcggCATGGCCAGCAGCATCTACGTATGTGGCCAGTACCTGGGCACCGCGCTGTTCACCGGTGCGCTGCTGTGGCTGGCGACCACCTATGACTGGCGCCACGTGTTCTACAGCACCGGTCTGGTCGGCATCCTGTTCGGCGTCGTG < NC_002947/1910353‑1910212 TTCCTTGCTTACCTTCTTGCAGTTCAGCGGGTCGCGGTACAGCACCAGCCACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGag > 1:308291/1‑147 CCTTGCTTACCTTCTTGCAGTTCAGCGGGTCGCGGTACAGCACCAGCCACACGACGCCGACCAGGATGCCGCCCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCGCG > 7:315001/1‑149 CTTGCTTACCTTCTTGCAGTTCAGCGGGTCGCGGTACAGCACCAGCCACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCGCG < 4:177693/148‑1 GGTCGCGGTACAGCACCAGCCACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCG > 1:25871/1‑120 GGTCGCGGTACAGCACCAGCCACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCG < 2:25871/120‑1 AGCCACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCGCGGCATGGCCAGCAGCATCTACGTATGTGGCCAGTACCTGGGCACC > 5:171002/1‑149 ACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCGCGGCATGGCCAGCAGCATCTACGTATGTGGCCAGTACCTGGGCACCGCGC < 6:171002/149‑1 GACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACATCGCGGCATGGCCAGCAGCATCTACGTATGTGGCCAGTACCTGGGCACCGCGCTGTT < 5:288726/149‑1 AGCGCGGCATGGCCAGCAGCATCTACGTATGTGGCCAGTACCTGGGCACCGCGCTGTTCACCGGTGCGCTGCTGTGGCTGGCGACCACCTATGACTGGCGCCACGTGTTCTACAGCACCGGTCTGGTCGGCATCCTGTTCGGCGTCGTG < 1:339582/149‑1 TTCCTTGCTTACCTTCTTGCAGTTCAGCGGGTCGCGGTACAGCACCAGCCACACGACGCCGAACAGGATGCCGACCAGACCGGTGCTGTAGAACACGTGGCGCCAGTCATAGGTGGTCGCCAGCCACAGCAGCGCACCGGTGAACAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1910161‑1910312 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcggCATGGCCAGCAGCATCTACGTATGTGGCCAGTACCTGGGCACCGCGCTGTTCACCGGTGCGCTGCTGTGGCTGGCGACCACCTATGACTGGCGCCACGTGTTCTACAGCACCGGTCTGGTCGGCATCCTGTTCGGCGTCGTG < NC_002947/1910353‑1910212 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |