| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2427597 = | 49 (0.870) | 3 (0.060) | 3/246 | NT | 6.2% | coding (131/513 nt) | PP_5503 | CheA signal transduction histidine kinase |
| ? | NC_002947 | 2427641 = | 44 (0.820) | coding (87/513 nt) | PP_5503 | CheA signal transduction histidine kinase | |||||
CTACCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2427749‑2427597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAGCA > NC_002947/2427641‑2427785 CTACCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCT > 1:258852/1‑149CTACCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCT > 3:128518/1‑149 CCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCA < 3:93839/149‑1 CCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGC < 2:111318/148‑1 CCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTG < 7:407/147‑1 GAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAATCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCG > 7:268752/1‑149 GCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCC > 7:85020/1‑79 GCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCC < 8:85020/79‑1 TGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGAAAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAG > 5:335948/1‑148 GCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCACAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAGC > 5:97674/1‑148 CAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAGCA > 3:10460/1‑148 AGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGA < 5:50577/138‑1 AGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGA > 6:50577/1‑138 CTACCCCACGCGCGGGGACTTGATGATGGACACTGCCTTATCGTTCGATGACGCCCTGCAGGGCTTTCTGCTGGATGCCCAGGTACTGCTGACCCAGGCCCAGGAATGCCTGCAGCATCTGGAGCTTATAGACAATGACCCGGATGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2427749‑2427597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGTCCCCGCGCGTGGGGTAGGCGCAGGGGGCGGGCACGCCGAAACGATAGCTAGCA > NC_002947/2427641‑2427785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |