New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2427597 =	49 (0.870)	3 (0.060)	3/246	NT	6.2%	coding (131/513 nt)	PP_5503	CheA signal transduction histidine kinase
	?	NC_002947	2427641 =	44 (0.820)					coding (87/513 nt)	PP_5503	CheA signal transduction histidine kinase

TCGCGGGTAAGGCTTCACGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGT  >  NC_002947/2427451‑2427732                                                                                                                                                   |                                                                                                                                        tCGCGGGTAAGGCTTCACGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTg                                                                                                                                       >  5:314615/1‑149 (MQ=255)  tgctagctatcgtttcggcgtgcccgccccctgcgcctaccccacgcgcggggacttgatgatggacactgccttatcgttcgatgacgccctgcagggctttctgctggatgcccaggtactgctgacccaggcccaggaatgcCTg                                                                                                                                       >  3:10460‑M1/146‑148 (MQ=255)   gctagctatcgtttcggcgtgcccgccccctgcgcctaccccacgcgcggggacttgatgatggacactgccttatcgttcgatgacgccctgcagggctttgtgctggatgcccaggtactgctgacccaggcccaggaatgcCTGc                                                                                                                                      >  5:97674‑M1/145‑148 (MQ=255)    ctagctatcgtttcggcgtgcccgccccctgcgcctaccccacgcgcggggacttgatgatggacactgccttttcgttcgatgacgccctgcagggctttctgctggatgcccaggtactgctgacccaggcccaggaatgcCTGCa                                                                                                                                     >  5:335948‑M1/144‑148 (MQ=255)      ggTAAGGCTTCACGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAgg                                                                                                                                   >  7:185745/1‑148 (MQ=255)       gTAAGGCTTCACGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCACAGGCGCGTAGCTTGACGTGCGATAGTGTCGAGGGTGTTGGTCAGGCAACTGCAgggc                                                                                                                                 >  6:276370/1‑147 (MQ=255)           tcgtttcggcgtgcccgccccctgcgcctaccccacgcgcggggacttgatgatggacactgccttatcgttcgatgacgccctgcagggctttctgctggatgcccaggtactgctgacccaggcccaggaatgcCt                                                                                                                                        >  6:50577‑M1/137‑138 (MQ=255)           tcgtttcggcgtgcccgccccctgcgcctaccccacgcgcggggacttgatgatggacactgccttatcgttcgatgacgccctgcagggctttctgctggatgcccaggtactgctgacccaggcccaggaatgcCt                                                                                                                                        <  5:50577‑M1/2‑1 (MQ=255)               tCACGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCgg                                                                                                                            <  8:315930/146‑1 (MQ=255)               tCACGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCgg                                                                                                                            >  7:315930/1‑146 (MQ=255)                  cGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCAtt                                                                                                                      <  7:11308/149‑1 (MQ=255)                    cTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGt                                                                                                                    <  6:299831/149‑1 (MQ=255)                     tGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTc                                                                                                                   >  4:322479/1‑149 (MQ=255)                       cAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTc                                                                                                                   <  2:5448/147‑1 (MQ=255)                              ccaccGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTc                                                                                                          <  8:100152/149‑1 (MQ=255)                               caccGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTc                                                                                                          >  2:258852/1‑148 (MQ=255)                                           ccGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAg                                                                                              >  6:18014/1‑148 (MQ=255)                                           ccGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAg                                                                                              <  5:18014/148‑1 (MQ=255)                                                cgcggggacttgatgatggacactgccttatcgttcgatgacgccctgcagggatttctgctggatgcccaggtactgctgacccaggcccaggaatgcCTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTc                                                                                        >  7:268752‑M1/100‑149 (MQ=255)                                                  gAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAg                                                                                              >  6:83408/1‑141 (MQ=255)                                                  gAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAg                                                                                              <  5:83408/141‑1 (MQ=255)                                                       aCTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTcctgggcc                                                                                 >  3:34584/1‑149 (MQ=255)                                                          gTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTcctgggcctgg                                                                              >  7:195502/1‑149 (MQ=255)                                                           ttGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTcctgggcctgg                                                                              <  2:70123/148‑1 (MQ=255)                                                                 ggAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGGCGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGGATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTcag                                                                         >  6:52102/1‑147 (MQ=255)                                                                  gAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTcagcag                                                                      <  4:34584/149‑1 (MQ=255)                                                                       ggtgTAGTGGGCAACTTCACGCAGGTCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCt                                                                 >  8:222352/1‑149 (MQ=255)                                                                        gtgtAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCgg                                                                                                                            >  5:101584/1‑89 (MQ=255)                                                                        gtgtAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCgg                                                                                                                            <  6:101584/89‑1 (MQ=255)                                                                        gtgtAGTGGGCAACTTCACGCAGGCCCACGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTg                                                                >  1:204822/1‑149 (MQ=255)                                                                           tAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAg                                                                                              <  1:240467/116‑1 (MQ=255)                                                                           tAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAg                                                                                              >  2:240467/1‑116 (MQ=255)                                                                             gTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAg                                                                                                                                    <  8:290067/76‑1 (MQ=255)                                                                             gTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAg                                                                                                                                    >  7:290067/1‑76 (MQ=255)                                                                                ggCAACTTCACGCAGGTCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCATGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATcc                                                         <  7:222352/148‑1 (MQ=255)                                                                                ggCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCa                                                                                                                                 <  3:191055/76‑1 (MQ=255)                                                                                ggCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCa                                                                                                                                 >  4:191055/1‑76 (MQ=255)                                                                                 gCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCcag                                                       >  4:128518/1‑149 (MQ=255)                                                                                           gCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGccc                                             >  5:260898/1‑149 (MQ=255)                                                                                            cAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCt                                            <  3:322479/149‑1 (MQ=255)                                                                                            cAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCt                                            >  4:263497/1‑149 (MQ=255)                                                                                             aGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTg                                           <  8:195502/149‑1 (MQ=255)                                                                                                 ccAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAgg                                       <  2:204822/149‑1 (MQ=255)                                                                                                          tAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTcctgg                                                                                    >  5:299851/1‑95 (MQ=255)                                                                                                          tAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTcctgg                                                                                    <  6:299851/95‑1 (MQ=255)                                                                                                           aGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCg                              >  4:287361/1‑148 (MQ=255)                                                                                                              ggatgcccaggtactgctgacccaggcccaggaatgcCTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGAtgctgc                                                                                                >  7:85020‑M1/38‑79 (MQ=255)                                                                                                              ggatgcccaggtactgctgacccaggcccaggaatgcCTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGAtgctgc                                                                                                <  8:85020‑M1/42‑1 (MQ=255)                                                                                                                 aCGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGAt                        <  3:287361/148‑1 (MQ=255)                                                                                                                 aCGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATa                       <  5:301470/149‑1 (MQ=255)                                                                                                                  cGGGCGATAGTGTCGAGGGTGTTTTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATaa                      <  5:276370/149‑1 (MQ=255)                                                                                                                   gggCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAg                     >  6:177363/1‑149 (MQ=255)                                                                                                                        aTAGTGGCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAgt                <  8:185745/149‑1 (MQ=255)                                                                                                                             gtCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCGAGATGCTGCAGGGATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGAt                        <  1:52390/136‑1 (MQ=255)                                                                                                                                gAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCcatca        >  6:102289/1‑149 (MQ=255)                                                                                                                                      gatgttCAGCCAACTGCGCGGAGCGGGGAAATTGTCTATAAGCTCCTGATGCTGCAGGCATTCCTGGGCCTGGGTGAGCAGTCCCTGGGCAGCCAGCTGAAAGCCGTGCAGGCCGTCATCGCACGATAAGGCATTGTCCATCTACAAGt  >  2:316611/3‑149 (MQ=255)                                                                                                                                         gttCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAgt                >  5:205870/1‑132 (MQ=255)                                                                                                                                         gttCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAgt                <  6:205870/132‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                        TCGCGGGTAAGGCTTCACGCTGCAGGCAACCACCGTGACAGGCCGGGGCGAGCAACTGTTGCAGGGAGGTGGTGTAGTGGGCAACTTCACGCAGGCCCAGGCGCGTAGCTTGACGGGCGATAGTGTCGAGGGTGTTGTTCAGGCAACTGCAGGCATCCGGGTCATTGTCTATAAGCTCCAGATGCTGCAGGCATTCCTGGGCCTGGGTCAGCAGTACCTGGGCATCCAGCAGAAAGCCCTGCAGGGCGTCATCGAACGATAAGGCAGTGTCCATCATCAAGT  >  NC_002947/2427451‑2427732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.