New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2542061 =	51 (0.900)	3 (0.060)	3/248	NT	5.5%	coding (595/993 nt)	PP_2234	AraC family transcriptional regulator
	?	NC_002947	2542124 =	54 (0.990)					coding (658/993 nt)	PP_2234	AraC family transcriptional regulator

CAGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2542213‑2542061 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGC  >  NC_002947/2542124‑2542204                                                                                                                                                                                                                                            CAGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGA                                                                                       <  7:9176/149‑1  AGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGAC                                                                                      <  1:332925/149‑1  AGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGAC                                                                                      <  1:338300/149‑1    CCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGG                                                                                    >  8:291035/1‑149                                                                                      TCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGC  >  8:71052/1‑149                                                                                        GTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCG        <  3:212850/141‑1                                                                                        GTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGCGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCG        >  4:212850/1‑141                                                                                                                                                                                                                                            CAGCCCCGCGCAGGCCGCCATCGTGGCCAGGTCGGCATCCTGCCCGCCATTGCCCTGCAACCAGTGCTGCACCTTCAACACGGCCTCGTCGCCGTGGTCCAGGCGCGGGTTGAACACAGCGCCGGGCAGCGGCGCCGCGACCGGATCGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2542213‑2542061 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGACGAGGCCGTGTTGAAGGTGCAGCACTGGTTGCAGGGCAATGGCGGGCAGGATGCCGACCTGGCCACGATGGCGGCCTGC  >  NC_002947/2542124‑2542204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.