New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2727126	50 (0.880)	3 (0.050)	3/252	NT	5.2%	coding (196/627 nt)	PP_2388	LysE family transporter
	?	NC_002947	= 2727175	61 (1.100)					coding (147/627 nt)	PP_2388	LysE family transporter

TCTGACGCGGGTGCCTGCAGGGCGTCCCTCAGCGTGCCCACGGCAATGTAGCCGATGAACAGGCAGCCCAGCAGGCTCATGGTGCTGAGCCATGTCTTGTCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2727020‑2727126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGCCGCCATCGACAAGACATGGCTCAGCACCATGAGCCTGCTGGGCTGCCTGTTCATC  <  NC_002947/2727175‑2727073                                                                                                                                                                                                                    TCTGACGCGGGTGCCTGCAGGGCGTCCCTCAGCGTGCCCACGGCAATGTAGCCGATGAACAGGCAGCCCAGCAGGCTCATGGTGCTGAGCCATGTCTTGTCGATGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCAC                                                               >  8:68347/1‑149             GCCTGCAGGGCGTCCCTCAGCGTGCCCACGGCAATGTAGCCGATGAACAGGCAGCCCAGCAGGCTCATGGTGCTGAGCCATGTCTTGTCGATGGCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGCCGCCAT                                                   <  7:68347/149‑1                  CAGGGCGTCCCTCAGCGTGCCCACGGCAATGTAGCCGATGAACAGGCAGCCCAGCAGGCTCATGGTGCTGAGCCATGTCTTGTCGATGGCATCACTGGGGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGCCGCCATCGA                                                <  1:234574/147‑1                                                                                                          GCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGCCGCCATCGACAAGACATGGCTCAGCACCATGAGCCTGCTGGGCTGCCTGTTCATC  >  5:26319/1‑105                                                                                                          GCATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGCCGCCATCGACAAGACATGGCTCAGCACCATGAGCCTGCTGGGCTGCCTGTTCATC  <  6:26319/105‑1                                                                                                                                                                                                                    TCTGACGCGGGTGCCTGCAGGGCGTCCCTCAGCGTGCCCACGGCAATGTAGCCGATGAACAGGCAGCCCAGCAGGCTCATGGTGCTGAGCCATGTCTTGTCGATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2727020‑2727126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcATCACTGGTGCTGATCGGCGCGGCAGCGTGGATCATCCTCACCAGTGCCGCCATCGACAAGACATGGCTCAGCACCATGAGCCTGCTGGGCTGCCTGTTCATC  <  NC_002947/2727175‑2727073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.