| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3213974 | 55 (0.970) | 3 (0.060) | 3/244 | NT | 5.4% | coding (1041/1137 nt) | mexC | multidrug RND transporter membrane fusion protein MexC |
| ? | NC_002947 | = 3214000 | 54 (1.010) | coding (1067/1137 nt) | mexC | multidrug RND transporter membrane fusion protein MexC | |||||
CCGACAACCACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3213820‑3213974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggctgCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTCGGTAATCTGCCAGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGCCGTCGCTGCCTCGCTGAACC < NC_002947/3214000‑3213854 CCGACAACCACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAG < 1:96481/149‑1CCGACAACCACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAG < 8:263502/149‑1 GACAACCACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGG < 3:272993/149‑1 AACCACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGCT > 2:125627/1‑149 ACCACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGAGGCTG > 1:190623/1‑149 CACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGCTG > 4:82946/1‑147 CACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGC < 7:122777/145‑1 CACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGC > 8:122777/1‑145 GGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGCTGCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTCGGTAATCTGCCA < 5:268834/149‑1 CATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGCTGCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTC > 7:239253/1‑105 CATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGCTGCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTC < 8:239253/105‑1 TGCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTCGGTAATCTGCCAGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGCCGTCGCTGCCTCGCTGAACC > 1:125627/1‑149 CCGACAACCACGCCATCCTGGTCCCACAGCGTGCGGTTCAGCGAGGCAGCGACGGCCAGGCGCGGGTCTTGGTCGCCACCAATGGCATCGCCGAGGCACGCGCGGTGCGCACCGGCGTGATGCAAGGCTCGCGCTGGCAGATTACCGAGGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3213820‑3213974‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggctgCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTCGGTAATCTGCCAGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGCCGTCGCTGCCTCGCTGAACC < NC_002947/3214000‑3213854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |